Changes between Version 84 and Version 85 of PluginDownload


Ignore:
Timestamp:
May 27, 2009, 2:37:53 PM (15 years ago)
Author:
Jari Häkkinen
Comment:

Restructured BASE 1.2 plug-in table list.

Legend:

Unmodified
Added
Removed
Modified

  • PluginDownload

    v84 v85  
    7272Plug-ins created for BASE 1.2 can be made to work in BASE 2 using the Base1PluginExecuter plug-in.
    7373
    74 || ''Name'' || ''Version'' || ''BASE version'' || ''Comment'' ||
    75 || ''Export'' || || || ||
    76 || [wiki:se.lu.onk.CGHDataDumper CGH Data Dumper] || || 1.2.17+, 2.8 || Dumps bioassay sets in several formats, useful for non-CGH data as well. [[br]] Not tested with BASE 1.2.17+ but expected to work ||
    77 || ''Filter'' || || || ||
    78 || [wiki:se.lu.onk.ReplicateError ReplicateError] || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.ReplicateError/ReplicateError-1.3.tgz?format=raw 1.3] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.ReplicateError/ReplicateError-1.3.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
    79 || ''Transformation'' || || || ||
    80 ||  [wiki:se.lu.onk.Center Median/mean centering] || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
    81 ||  [wiki:se.lu.onk.MergeBioAssay Merge BioAssay] || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
    82 ||  [wiki:se.lu.onk.VirtualArray Virtual Array] || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz?format=raw 1.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.10 || Not tested with BASE 1.2.17+ but expected to work. ||
    83 || [wiki:se.lu.thep.WeNNI WeNNI] || [http://baseplugins.thep.lu.se/attachment/wiki/WeNNI/wenni-0.6.tar.gz?format=raw 0.6] || 1.2.17+ || Implementation of a published missing value imputation algorithm [[br]] http://www.biomedcentral.com/1471-2105/7/306 ||
    84 || ''Other'' || || || ||
    85 ||  [wiki:se.lu.onk.BaseFile BaseFile] || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz?format=raw 1.0] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Java utility package for reading the BASEFile format. Required for many se.lu.onk-series plug-ins. [[br]] Not tested with BASE 1.2.17+ but expected to work. ||
     74|| ''Name'' || ''Type'' || ''Version'' || ''BASE version'' || ''Comment'' ||
     75||  [wiki:se.lu.onk.BaseFile BaseFile] || Other || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz?format=raw 1.0] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Java utility package for reading the BASEFile format. Required for many se.lu.onk-series plug-ins. [[br]] Not tested with BASE 1.2.17+ but expected to work. ||
     76|| [wiki:se.lu.onk.CGHDataDumper CGH Data Dumper] || Export || || 1.2.17+, 2.8 || Dumps bioassay sets in several formats, useful for non-CGH data as well. [[br]] Not tested with BASE 1.2.17+ but expected to work ||
     77||  [wiki:se.lu.onk.Center Median/mean centering] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
     78||  [wiki:se.lu.onk.MergeBioAssay Merge BioAssay] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
     79|| [wiki:se.lu.onk.ReplicateError ReplicateError] || Filter || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.ReplicateError/ReplicateError-1.3.tgz?format=raw 1.3] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.ReplicateError/ReplicateError-1.3.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
     80||  [wiki:se.lu.onk.VirtualArray Virtual Array] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz?format=raw 1.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.10 || Not tested with BASE 1.2.17+ but expected to work. ||
     81|| [wiki:se.lu.thep.WeNNI WeNNI] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/WeNNI/wenni-0.6.tar.gz?format=raw 0.6] || 1.2.17+ || Implementation of a published missing value imputation algorithm [[br]] http://www.biomedcentral.com/1471-2105/7/306 ||
    8682
    8783 ''Quality Control (QC)''::