Changes between Version 100 and Version 101 of PluginDownload
- Timestamp:
- Feb 12, 2010, 8:01:06 AM (15 years ago)
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PluginDownload
v100 v101 13 13 || ''Name'' || ''Type'' || ''BASE version'' || ''Maintainer'' || ''Comment'' || 14 14 || [wiki:uk.ac.ebi.AffyArrayDesignBatchImporter AffyArrayDesignBatchImporter] || Import || 2.2 || None || Imports batches of Affymetrix array design. || 15 || [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE] || Normalization || 2.0 || Lund team || Affymetrix normalization with RMAExpress or Plier ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]). || 15 16 || [wiki:uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter] || Import || 2.0 || None || Import annotation type and controlled vocabularies from a simple flat file. || 16 17 || [wiki:uk.ac.scri.batchimporter BatchDataImporter] || Import || 2.2 || Micha Bayer || Imports batches of data files into BASE, creating a single !RawbioAssay for each file. || 17 18 || [wiki:nl.unimaas.bigcat.GCRMA GCRMA] || Normalization || 2.0 || Patrick Ahles || Normalization of Affymetrix data || 18 19 || [wiki:net.sf.basedb.illumina Illumina plug-ins package] || Add array platform || 2.12 || Lund team || A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. || 20 || [wiki:net.sf.basedb.normalizers Normalization package] || Normalization || 2.7 || A package with different kinds of normalization plug-ins. || 19 21 || [wiki:uk.ac.ebi.Tab2MageExporter Tab2MageExporter] || Export || 2.14.1 || None || Exports an experiment meta-data in the tab2mage specification. || 20 22 || [wiki:uk.ac.ebi.Tab2MageImporter Tab2MageImporter] || Import || 2.2 || None || Imports raw data files and an experiment meta-data in the tab2mage specification. || … … 25 27 26 28 ''Normalization'':: 27 [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier28 ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]). The Plier algorithm in this plug-in is superseded by the [http://madr.lcb.uu.se/wiki/APT APT] plug-in. Works with BASE '''2.0 and later''' [[br]]29 [http://madr.lcb.uu.se/wiki/APT APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''[[BR]]30 [wiki:net.sf.basedb.normalizers Normalization package]: A package with different kinds of normalization plug-ins. Works with '''BASE 2.7 and later'''31 29 ''Transformation'':: 32 30 [wiki:se.lu.thep.WeNNI WeNNI]: Missing value imputation. '''Not released yet'''