Opened 8 years ago

Last modified 8 years ago

#861 closed task

YellowLabel tracking wizard — at Version 2

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.3
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

See #771.

Implement a new wizard for tracking and summarize the progress of specimen marked with YellowLabel.

The wizard should display information about active specimen (=specimen that has been annotated with the YellowLabel annotation but no report has been sent).

We need new annotations on the specimen level to track what to report and if a report has been sent or not.

  • ReportsToSend: Enumerated annotation for specifying which reports to send. Currently PilotReport is the only value. It is possible for yellow specimen to have no value for this annotation.
  • CompletedDate: Date when processing this specimen has been completed including sending the requested reports (if any). It is assumed that all requested reports are sent at the same time.
  • CompletedStatus: Enumerated annotation that is set when a yellow specimen is considered complete. No value indicates a specimen that is in progress. Possible values need to be defined.

For each active yellow specimen the wizard should display:

  • Name
  • Arrival date
  • Sampling date
  • RNA extraction date (Qiacube date)
  • Flagged RNA
  • Some info about library...
  • Some info about sequencing...
  • Some info about reports...

If the logged in user has enough permissions (PatientCurator?) it should be possible to perform actions on the specimen.

  • Generate and package the reports in a zip file
  • Mark specimen as completed
  • More...?

This specification is not yet complete...

Change History (2)

comment:1 by Nicklas Nordborg, 8 years ago

Milestone: Reggie v4.xReggie v4.3
Status: newassigned

comment:2 by Nicklas Nordborg, 8 years ago

Description: modified (diff)
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