Changes between Initial Version and Version 1 of Ticket #79, comment 11


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Timestamp:
Sep 25, 2013, 4:00:30 PM (11 years ago)
Author:
olle

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  • Ticket #79, comment 11

    initial v1  
    44 1. Assume that "`Experiment A`" has been selected under `View -> Experiments`.
    55 2. Select tab "`Bioassay sets`" to show available bioassay sets for the experiment.
    6  3. Assume that "`Filtered bioassay set (guest)`" has been selected by clicking on the name. Properties for that bioassay sets are then shown in the "`Properties`" tab.
     6 3. Assume that "`Filtered bioassay set (guest)`" has been selected by clicking on the name. Properties for that bioassay set are then shown in the "`Properties`" tab.
    77 4. Click on tool bar button "`Run analysis...`" in the "`Properties`" tab to run an analysis plug-in for the bioassay set. The plug-in configuration window will open, to allow selection and configuration of a plug-in.
    88 5. Select the "`Center`" plug-in. Assume that the following settings are chosen:[[BR]]Child name: `Filtered bioassay set (guest) - centering all genes after group [0,2] mean`[[BR]]Center on genes/arrays: `Genes (rows)`[[BR]]Assay groups for centering: `Single assay group - Center all data based on values in single assay group`[[BR]]Center group(s) assay names: `Raw bioassay A.00h,Raw bioassay A.24h`[[BR]]Number of centering cycles: `1`[[BR]]Centering using median or mean: `Mean`[[BR]]Create debug files: `yes`[[BR]]Start the plug-in and wait until it finishes.