Changes between Initial Version and Version 1 of Ticket #759, comment 19


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Timestamp:
Mar 24, 2015, 4:22:08 PM (8 years ago)
Author:
olle
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  • Ticket #759, comment 19

    initial v1  
    11Functional specification update:
    22
    3  * !MeLuDi DNA/RNA registration/quantification wizard should be updated in Qubit file parsing:[[BR]]a. The read assay concentration in ng/µl should be multiplied by a dilution factor of `200.0`, which is default for Qubit.[[BR]]b. An assay concentration value that is not a number (probably "`<0.50`") should not trigger an error message, when the initial reversed list is created.[[BR]]c. (probably caused by the string "`<0.50`", indicating a concentration < 0.50 ng/ml excluding dilution, and should be replaced by `0.0`, instead of triggering an error message.
     3 * !MeLuDi DNA/RNA registration/quantification wizard should be updated in Qubit file parsing:[[BR]]a. The read assay concentration in ng/µl should be multiplied by a dilution factor. If a dilution factor is supplied in the "`Dilution Factor`" column of the item, that should be used, otherwise the Qubit default of `200.0`.[[BR]]b. An assay concentration value that is not a number (probably "`<0.50`") should not trigger an error message, but be replaced by "`0.0`". If such replacements are performed, and no error having occurred indicating the file is invalid, the Qubit file entry should be flagged, and a note of the last item having its value changed in this way should be displayed.
    44
    55Design update:
    66
    7  1. Javascript file `case_summary.js` in `resources/reports/` updated in function `cs.caseInfoLoaded()` to add a column with links to optional start DNA plates for the specimens. The start plate info is retrieved from the specimen JSON object using key "`startPlate`".
     7 1. Javascript file `extraction_registration.js` in `resources/sampleproc/` updated:[[BR]]a. A global constant `QUBIT_DILUTION_FACTOR` with value `200.0` is defined.[[BR]]b. Function `exreg.parseQubitFile(data)` updated:[[BR]]i. A dilution factor will be read from the "`Dilution Factor`" column of an item, and be multiplied with the read assay concentration in ng/µl. If no dilution factor is supplied for an item, the value of global constant `QUBIT_DILUTION_FACTOR` is used.[[BR]]ii. An assay concentration value that is not a number (probably "`<0.50`") will now not trigger an error message, but be replaced by "`0.0`". If such replacements are performed, and no error having occurred indicating the file is invalid, the Qubit file entry will be flagged, and a note of the last item having its value changed in this way be displayed.