Changes between Version 1 and Version 2 of Ticket #690, comment 5


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Timestamp:
Nov 17, 2014, 2:41:34 PM (10 years ago)
Author:
olle

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  • Ticket #690, comment 5

    v1 v2  
    99 5. Sample source report.[[BR]]a. Sample count report.[[BR]]b. Patient count report.[[BR]]c. Overview report.[[BR]]d. Missing sample data report.
    1010
    11 All wizards have counterparts in Reggie:
     11All wizards have counterparts in Reggie, but not all input fields are equal:
    1212 1. The !MeLuDi installation wizard is basically just a modified version adapted to variables relevant here.
    1313 2. Case registration takes the following input:[[BR]]a. Case name.[[BR]]b. Number of tubes.[[BR]]c. Arrival date.[[BR]]d. Sampling date.[[BR]]e. Mutation analysis.[[BR]]f. Site.[[BR]]g. Sample type.[[BR]]h. Project focus.[[BR]]i. Other path note.[[BR]]Input for each specimen tube:[[BR]]j. Storage box, row, column. Values are suggested by the program. Note! Not used for the first specimen, since all amount is expected to be used for analysis.[[BR]]k. Operator delivery comment.
    … …  
    1515 4. Case summary has been adapted to variables used in !MeLuDi.
    1616 5. Sample source reports are simplified and more or less adapted versions of Reggie counterparts:[[BR]]a. Sample count report: Number of specimens per time interval from the various sites for a chosen time period. Has a project focus filter with value "None", "Melanoma", "Lung cancer", and "unknown".[[BR]]b. Patient count report shows the number of patients per time interval from the various sites for a chosen time period.[[BR]]c. Overview report contains two tables showing data for each site for a chosen time period; one shows number of patients and specimens and the other number of patients having 1, 2, or more specimens. Has a project focus filter with value "None", "Melanoma", "Lung cancer", and "unknown".[[BR]]d. Missing sample data report shows number of specimens for each site missing patient, patient name, PAD reference, or sampling data. Has a project focus filter with value "None", "Melanoma", "Lung cancer", and "unknown".
     17
     18Input options via check boxes/menus:
     19
     20|| '''Input name''' || '''Input type''' || '''Options''' || '''Default''' ||
     21|| Mutation analysis || Check boxes || `KRAS_NRAS`, `BRAF`, `EGFR` || - ||
     22|| Site || Menu || `unknown`, `Helsingborg`, `Kristianstad`, `Linköping`, `Lund`, `Malmö` || `unknown` ||
     23|| Sample type || Menu || `unknown`, `Primary tumour`, `Metastasis`, `DNA`, `RNA` || `unknown` ||
     24|| Project focus || Menu || `unknown`, `Melanoma`, `Lung cancer` || `unknown` ||