Changes between Initial Version and Version 1 of Ticket #547


Ignore:
Timestamp:
Feb 12, 2014, 11:21:29 AM (11 years ago)
Author:
Nicklas Nordborg
Comment:

Updated information about parameters for the demux program.

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  • Ticket #547 – Description

    initial v1  
    77 * Name of item: `SequencingRunNNN.dx`, `SequeningRunNNN.dx2` ...
    88 * Software and protocol: (Type=Demuxing)
    9  * `ReadString`: Annotation automatically calculated from `SequencingCycles` annotation on the flow cells
     9 * `ReadString`: Annotation automatically calculated from `SequencingCycles` annotation on the parent `SequencingRun` item
    1010
    1111The wizard also creates one `MergedSequences` for each `Library` that has been sequenced:
    … …  
    1919
    2020'''Parameters for the demux program:'''
    21  * Start date (=`SequencingStart` annotation on `SequencingRun`)
    22  * Serial number of !HiSEQ (=Hardcoded; in BASE 3.3 -> annotation on Hardware item)
    23  * Run number (=not known but CASA2 can find out; or should we keep annotation on `SequencingRun` item??)
    24  * Lane (=`HiSeqPosition` annotation on `FlowCell`)
    25  * Flow cell ID (=`FlowCellID` annotation on `FlowCell`)
     21 * Data files folder (=`DataFilesFolder` annotation on `SequencingRun`)
    2622 * Sample sheet (exported from BASE and saved by operator to correct place on cluster). To be able to export the sample sheet the following info is needed
    2723    * Read string (=`ReadString` annotation on `DemuxedSequences`)