Changes between Initial Version and Version 1 of Ticket #541, comment 11


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Timestamp:
Dec 10, 2013, 9:52:40 AM (10 years ago)
Author:
olle

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  • Ticket #541, comment 11

    initial v1  
    11(In [2167]) Refs #541. Rank invariant normalization updated to store data in same format as before the normalization, untransformed, log-2, log-10. (Note that Rank inveriant normalization currently is only implemented for one-channel data):
    22
    3  1. Class/file `RankInvariantNormalization.java` in `src/net/sf/basedb/plugins/` in package `net.sf.basedb.normalizers` updated in private method `BioAssaySet normalize1Ch(DbControl dc, BioAssaySet source, List<?> masterAssays, int numIteration, Job job, ProgressReporter progress)` updated to call public method `double transform(double value)` in class `IntensityTransform` to transform the normalized result back before storing it.
     3 1. Class/file `RankInvariantNormalization.java` in `src/net/sf/basedb/plugins/` in package `net.sf.basedb.normalizers` updated in private method `BioAssaySet normalize1Ch(DbControl dc, BioAssaySet source, List<?> masterAssays, int numIteration, Job job, ProgressReporter progress)` to call public method `double transform(double value)` in class `IntensityTransform` to transform the normalized result back before storing it.