Changes between Version 28 and Version 41 of Ticket #533


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Timestamp:
Aug 18, 2014, 2:46:07 PM (10 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #533 – Description

    v28 v41  
    1515 5. (#593) Start filtering and alignment. Bowtie and !TopHat is used to first filter and then align against a pre-defined set of transcripts.
    1616
    17  6. Register filtering and alignment as ended. At the end we have one "!AlignedSequences" item for each "Library" from the flow cells that was sequenced. BAM files for each library are stored on the server.
     17 6. (#595) Register filtering and alignment as ended. At the end we have one "!AlignedSequences" item for each "Library" from the flow cells that was sequenced. BAM files for each library are stored on the server.
     18
     19The remaining issues are postponed to a later release.
    1820
    1921 7. Start feature extraction. Cufflinks is used to calculate expression values.