Changes between Initial Version and Version 4 of Ticket #1609


Ignore:
Timestamp:
Aug 13, 2024, 8:46:16 AM (3 months ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1609

    • Property Resolution → fixed
    • Property Status new → closed

  • Ticket #1609 – Description

    initial v4  
    88
    99`ILLUMINACLIP:${TRIMMOMATIC_ADAPTERS}/TruSeq3-PE-2.fa:2:30:12:1:true MINLEN:20`
     10
     11**UPDATE**
     12Turned out that adding the file name was not enough since the `TRIMMOMATIC_ADAPTERS` variable is not set until we are inside the container and the configuration happens before that when the variable is empty. The configuration file need to use the full path:
     13
     14`/miniconda/share/trimmomatic-0.33-3/adapters/TruSeq3-PE-2.fa`