Opened 7 months ago

Last modified 5 months ago

#1581 closed task

Convert all raw bioassay items to derived bioassays — at Version 2

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Reggie v5.0
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

The raw bioassay level is problematic since it doesn't allow us to create child items. Since we no longer use any raw bioassay specific features it would be a lot nicer to have everything at the derived bioassay level. Downstream analysis can then be added as child items instead of just adding more files and annotations to existing items.

This is a huge work that require a lot of changes to existing wizards.

We also need a way to convert existing raw bioassays to derived bioassays without losing any information. We might need some help of low-level BASE functionality here. See ​https://base.thep.lu.se/ticket/2321

Data releases and the Relax server is also affected.

Change History (2)

comment:1 by Nicklas Nordborg, 6 months ago

In 7682:

References #1581: Convert all raw bioassay items to derived bioassays

Marking RawBioAssay-related things in Reggie (and also in the BASE code) as deprecated. We get 1136 compilation warnings.

comment:2 by Nicklas Nordborg, 6 months ago

Description: modified (diff)
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