Changes between Version 1 and Version 2 of Ticket #1575, comment 6


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Timestamp:
Mar 1, 2024, 10:48:29 AM (9 months ago)
Author:
Nicklas Nordborg

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  • Ticket #1575, comment 6

    v1 v2  
    11In [changeset:"7604" 7604]:
    2 {{{#!CommitTicketReference repository="" revision="7604"
     2
    33References #1575: Impute genotypes from OncoArray data
    44
    55Implemented the phasing step with ShapeIT. Since the program is not so good at multi-threading, we start one process per chromosome instead limited to the number of assigned threads. The wrapper code is very similar to the code in the WGS variant calling. A full run takes ~1.5 hour to complete this step (using 8 threads).
    6 }}}