Changes between Initial Version and Version 1 of Ticket #1575, comment 6


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Timestamp:
Mar 1, 2024, 10:46:47 AM (3 months ago)
Author:
Nicklas Nordborg

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  • Ticket #1575, comment 6

    initial v1  
    33References #1575: Impute genotypes from OncoArray data
    44
    5 Implemented the phasing step with ShapeIT. Since the program is not so good at multi-threading, we start one process per chromosome instead limited to the number of assigned threads. The wrapper code is very similar to the code in the WGS variant calling. A full run takes ~1.5 hour to complete this step.
     5Implemented the phasing step with ShapeIT. Since the program is not so good at multi-threading, we start one process per chromosome instead limited to the number of assigned threads. The wrapper code is very similar to the code in the WGS variant calling. A full run takes ~1.5 hour to complete this step (using 8 threads).
    66}}}