Changes between Initial Version and Version 18 of Ticket #1562


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Timestamp:
Jan 31, 2024, 8:40:10 AM (10 months ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1562 – Description

    initial v18  
    2020
    2121Most information can be extracted from the FASTQ files. We are not sure if the FASTQ files have merged data from different sequencing runs. In that case we may want to split them per flow cell and lane so that they are compatible with existing data.
     22
     23**UPDATE**
     24It is better to make this procedure a bit more like the FASTQ import from the RNAseq side. This means that there is a first wizard that will read information from a CSV-file (provided by the external operator) that we use to create child Library and !DemuxedSequences items. Then there is a second wizard that processes the FASTQ files and put them in the right place and create the !MergedSequences item. Automatica processing and failures can be handled just as we are used to from the RNAseq pipeline (eg. delete the !MergedSequences item). So we also need:
     25
     26 * !DemuxedSequences items
     27   - Pipeline
     28   - !DataFilesFolder
     29   - RawFASTQ