Changes between Initial Version and Version 1 of Ticket #1390


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Timestamp:
May 2, 2022, 12:05:19 PM (2 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1390 – Description

    initial v1  
    22
    33Some wizards, for example, those that create lab protocols may have to use the `TubeLabel` text instead of the item name. Exactly which wizards that need to be updated have not yet been determined. It has to be done as part of this ticket.
     4
     5Normally, these items will not show up in any wizard unless they are selected for re-processing at some step. This typically happens from the "Flagged RNA" wizard so we start from there and follow the lab processing step by step. In all cases we assume that when a material has been handled the produced new items will be labeled using the standard SCAN-B naming scheme.
     6
     7'''Flagged RNA wizard'''[[br]]
     8This wizard doesn't need the `TubeLabel` information for it's functionality, but it may be useful to display it as a reminder so that lab people can be notified beforehand. From this wizard it is possible to start a re-processing at 3 different levels:
     9
     10 * Specimen → Partition wizard
     11 * Lysate → Pick lysate for re-extraction, and the other extraction wizards
     12 * RNA → Either the 'RNA normalization wizard' or the 'Create new library plate wizard'
     13
     14'''Partition wizard'''[[br]]
     15The wizard include all specimen marked for `ReProcessing` in the second list. It doesn't care about the storage location and works even if there is no information.
     16
     17The "pick list" need to display `TubeLabel` information.
     18
     19Step 2 need to display `TubeLabel` information. The wizard generates a "label" file for new tubes. The new labels are based on SCAN-B names.
     20
     21'''Pick lysate for re-extraction'''[[br]]
     22The wizard only include item in `Lys%` boxes. This may need to be changed since it is most likely that the external boxes are named differently. Registration will move selected items to `ExtraLys%` boxes so maybe it should allow boxes except `ExtraLys%`.
     23
     24The protocol should include `TubeLabel` information.
     25
     26'''Lab tracking protocol for Allprep isolation'''[[br]]
     27The wizard only include lysates stored in `ExtraLys%` box. The wizard generates a "label" file for new tubes. The new labels are based on SCAN-B names.
     28
     29The protocol should include `TubeLabel` information.
     30
     31'''DNA/RNA/FlowThrough registration'''[[br]]
     32The wizard only include lysates stored in `ExtraLys%` box. The wizard generates a "label" file for new tubes. The new labels are based on SCAN-B names.
     33
     34The table in step 3 should include `TubeLabel` information.
     35
     36The !NanoDrop file uses SCAN-B names for new items.
     37
     38'''RNA concentration normalization'''[[br]]
     39Manual selection of RNA is possible. The protocol should include `TubeLabel` information. New labels for the pre-normalized tubes are created manually. It is assumed that the SCAN-B name is used for this.
     40
     41'''Create new library plate'''[[br]]
     42Manual selection of RNA is possible or auto-selection if the RNA is marked for re-processing. `TubeLabel` information doesn't have to be included and doesn't affect functionality.
     43
     44'''Lab protocol for mRNA and cDNA preparation'''[[br]]
     45`TubeLabel` information should be included in the lab protocol.