Changes between Initial Version and Version 13 of Ticket #1299


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Timestamp:
Aug 16, 2021, 1:45:43 PM (2 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1299

    • Property Status changed from new to closed
    • Property Resolution changed from to fixed

  • Ticket #1299 – Description

    initial v13  
    1 This is related to #1295 and is the second step after importing information about the specimen. The import in #1295 should create all items from the specimen down to !MergedBioAssay. The !MergedBioAssay will be a placeholder only until FASTQ files has been imported and processed with Trimmomatic. It will probably be a good idea to use the pattern with an item list to control the flow of items between #1295 and this import.
     1This is related to #1295 and is the second step after importing information about the specimen. The import in #1295 should create all items from the specimen down to ~~!MergedBioAssay~~ !DemuxedSquences. The !DemuxedSquences will be different and only represent a single library instead of an entire flow cell. See [6215].
     2
     3It will probably be a good idea to use the pattern with an item list to control the flow of items between #1295 and this import.
    24
    35It is expected that the FASTQ files have not been processed after the demux except for adapter trimming that has replaced reads with N instead of removing reads from the FASTQ files.