Changes between Version 5 and Version 6 of Ticket #1029, comment 168


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Timestamp:
Nov 8, 2018, 8:12:15 AM (6 years ago)
Author:
olle

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  • Ticket #1029, comment 168

    v5 v6  
    77 3. FFPE block registration form:[[BR]]a. Typo should be fixed in step 1 of the wizard (see change set [http://baseplugins.thep.lu.se/changeset/5073 [5073]]).[[BR]]b. Each FFPE block should have input fields for PAD, material number (block number), and localization.
    88 4. FFPE section order form:[[BR]]a. Form should be updated to print H&E glass names on separate lines.[[BR]]b. Form should be updated to print material number instead of PAD number.[[BR]]c. H&E glass names should consist of FFPE block name plus suffix ".F" or ".E" (for "Före"/"Front" and "Efter"/"End", respectivly), i.e. string "he-" is removed from suffix.[[BR]]d. The FFPE section should be printed as bar code and text, in addition to FFPE block name.[[BR]]e. The offset for printed text and bar codes between adjacent FFPE block entries has to be adjusted, as the height of the frame for each has been increased, in order to accompany more information/input lines.[[BR]]f. The final step should include a new button "Form OK" to register current FFPE block items as having been used in FFPE section order forms.
    9  5. FFPE section (specimen) registration:[[BR]]a. String "Viable" removed in "% Viable tumor cells".[[BR]]b. PAD exchanged for material number (FFPE block number).[[BR]]c. Two H&E glass items should be created for each FFPE section, with names consisting of FFPE block name plus suffix ".F" or ".E" (for "Före"/"Front" and "Efter"/"End", respectivly). Each H&E glass item should have the value of % tumor cells saved in an annotation.[[BR]]d. Specimens should be created without box storage data, as all section material will be used for extraction.[[BR]]e. DNA and RNA extract items with predetermined box positions should be created for each specimen, in order to adhere to the standard MeLuDI extraction pipeline.
     9 5. FFPE section (specimen) registration:[[BR]]a. A new annotation for "% Tumor cells" is needed, in addition to the one for "% Viable tumor cells".[[BR]]b. String "Viable" removed in "% Viable tumor cells".[[BR]]c. PAD exchanged for material number (FFPE block number).[[BR]]d. Two H&E glass items should be created for each FFPE section, with names consisting of FFPE block name plus suffix ".F" or ".E" (for "Före"/"Front" and "Efter"/"End", respectivly). Each H&E glass item should have the value of % tumor cells saved in an annotation.[[BR]]e. Specimens should be created without box storage data, as all section material will be used for extraction.[[BR]]f. DNA and RNA extract items with predetermined box positions should be created for each specimen, in order to adhere to the standard MeLuDI extraction pipeline.
    1010 6. Case Summary:[[BR]]a. Support for new FFPE block annotations should be added.[[BR]]b. Support for H&E glass items should be added, with report rows for annotation values for % tumor cells.[[BR]]c. Related item highlight feature should be imported from Reggie (when an item is clicked, downstream items with same beginning of name are shown with green background).