Changes between Version 1 and Version 2 of Ticket #1029, comment 168


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Timestamp:
Nov 6, 2018, 9:59:04 AM (6 years ago)
Author:
olle

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  • Ticket #1029, comment 168

    v1 v2  
    77 3. FFPE block registration form:[[BR]]a. Typo should be fixed in step 1 of the wizard (see change set [http://baseplugins.thep.lu.se/changeset/5073 [5073]]).[[BR]]b. Each FFPE block should have input fields for PAD, material number (block number), and localization.
    88 4. FFPE section order form:[[BR]]a. Form should be updated to print H&E glass names on separate lines.[[BR]]b. Form should be updated to print material number.[[BR]]c. H&E glass names should consist of FFPE block name plus suffix ".F" or ".E" (for "Före"/"Front" and "Efter"/"End", respectivly), i.e. string "he-" is removed from suffix.[[BR]]d. The final step should include a new button "Form OK" to register current FFPE block items as having been used in FFPE section order forms.
    9  5. FFPE section (specimen) registration:[[BR]]a. String "Viable" removed in "% Viable tumor cells".
     9 5. FFPE section (specimen) registration:[[BR]]a. String "Viable" removed in "% Viable tumor cells".[[BR]]b. PAD exchanged for material number (FFPE block number).[[BR]]c. Two H&E glass items should be created for each FFPE section, with names consisting of FFPE block name plus suffix ".F" or ".E" (for "Före"/"Front" and "Efter"/"End", respectivly). Each H&E glass item should have the value of % tumor cells saved in an annotation.[[BR]]d. Specimens should be created without box storage data, as all section material will be used for extraction.[[BR]]e. DNA and RNA extract items with predetermined box positions should be created for each specimen, in order to adhere to the standard MeLuDI extraction pipeline.
     10 6. Case Summary:[[BR]]a. Support for new FFPE block annotations should be added.[[BR]]b. Support for H&E glass items should be added, with report rows for annotation values for % tumor cells.