Changes between Version 1 and Version 2 of Ticket #1001


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Timestamp:
Nov 10, 2017, 9:16:08 AM (5 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1001 – Description

    v1 v2  
    77`snp.list` and `snp.vcf` are two files containing information about the 51 SNPs we are interested in. We should investigate if we can do without the `snp.list`.
    88'''[UPDATE] No, we need it, since otherwise the !HaplotypeCaller will check the entire BAM file which will take about one 1 hour instead of ~10 seconds.'''
     9'''[UPDATE 2] It seems like the `-L` parameter also accepts a VCF-file. Thus we can (re-)use the `snp.vcf` and there is no need for the `snp.list` file.'''
    910
    1011{{{