Changes between Version 29 and Version 30 of se.lu.onk.IlluminaSNPNormalization

Timestamp:

Sep 16, 2008, 11:16:48 AM (16 years ago)

Author:

markus

Comment:

--

se.lu.onk.IlluminaSNPNormalization

@@ -13 +13 @@
 === Download tQN ===
 
-[http://cbbp.thep.lu.se/~markus/software/tQN-1.0.0.zip?format=raw Download the latest stand-alone release (tQN-1.0.0)].  [[BR]]
+[http://cbbp.thep.lu.se/~markus/software/tQN/tQN-1.0.0.zip?format=raw Download the latest stand-alone release (tQN-1.0.0)].  [[BR]]
 
 === How to use tQN ===
@@ -72 +72 @@
 ''tQN B allele frequencies and log R ratios''
 
-  CNV probes are not normalized by tQN; for these probes the original X and Y intensities from !BeadStudio are kept. tQN may result in a slightly smaller number of SNPs having data. The reason for this reduction is that some SNPs have not been genotyped in the !HapMap samples used to generate the cluster files. A detailed description of how tQN X and Y intensities are turned into tQN BAF and tQN log R ratios is available [http://cbbp.thep.lu.se/~markus/software/ReadMe_calculation_BAF_Log_R_Ratio.pdf?format=raw here]. 
+  CNV probes are not normalized by tQN; for these probes the original X and Y intensities from !BeadStudio are kept. tQN may result in a slightly smaller number of SNPs having data. The reason for this reduction is that some SNPs have not been genotyped in the !HapMap samples used to generate the cluster files. A detailed description of how tQN X and Y intensities are turned into tQN BAF and tQN log R ratios is available [http://cbbp.thep.lu.se/~markus/software/tQN/ReadMe_calculation_BAF_Log_R_Ratio.pdf?format=raw here]. 
 
 ''Supported beadchip types''