Changes between Version 31 and Version 32 of se.lu.onk.BAFsegmentation

Timestamp:

Mar 13, 2009, 6:15:28 PM (15 years ago)

Author:

markus

Comment:

--

se.lu.onk.BAFsegmentation

@@ -10 +10 @@
 
 === News ===
+ 
+ * Mar. 13, 2009. BAFsegmentation 1.1.2 release. This is a minor bug-fix release. Fixed bugs include errors in documentation (default has never been to remove cnv probes), handling of when there are no probes for entire chromosomes, and 'split_samples.pl' can now handle locales where comma denotes the decimal point.
+
  * Feb. 6, 2009. BAFsegmentation 1.1.1 release. This is a minor bug-fix release fixing a bug in bookmark files generated for import into !BeadStudio.
 
@@ -31 +34 @@
 === Download BAFsegmentation ===
 
-[http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1.1.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.1).]
+[http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1.2.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.2).]
 
 === Supplemental Data ===
@@ -79 +82 @@
     perl split_samples.pl --data_file=example/example_beadstudio_data.txt
   }}}
-  where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above.
+  where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above. With some language settings !BeadStudio exports files with commas (,) as decimal points; 'split_samples.pl' replaces all commas (,) in data columns with points (.) the 'split_samples.pl' results files.
 
   This script will generate one file per sample together with a file ''sample_names.txt'' in the BAFsegmentation subdirectory ''extracted''. These files are used when BAFsegmentation is run and can be deleted once the samples are normalized.
@@ -91 +94 @@
   }}}
 
-  This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly. 
+  This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly. Note that   BAFsegmentation requires points (.) for decimal points.