Changes between Version 26 and Version 27 of se.lu.onk.BAFsegmentation

Timestamp:

Oct 17, 2008, 4:51:32 PM (16 years ago)

Author:

markus

Comment:

--

se.lu.onk.BAFsegmentation

@@ -105 +105 @@
 ''Results''
 
-  The segmented regions identified as allelic imbalance are stored in the file ''AI_regions.txt'' in the BAFsegmentation subdirectory ''segmented''. In addition an xml-file ''AI_regions.xml'' with the regions is also produced. This xml-file can be imported as a bookmark file into the Illumina !BeadStudio software for visualization and further analysis of the identified regions.
+  * The segmented regions identified as allelic imbalance are stored in the file ''AI_regions.txt'' in the BAFsegmentation subdirectory ''segmented''. In addition an xml-file ''AI_regions.xml'' with the regions is also produced. This xml-file can be imported as a bookmark file into the Illumina !BeadStudio software for visualization and further analysis of the identified regions.
 
-  In the BAFsegmentation subdirectory ''plots'', the following postscript files are generated:
+  * In the BAFsegmentation subdirectory ''plots'', the following postscript files are generated:
     * A file for each sample with three plots per chromosome: a BAF plot with non-informative homozygous SNPs removed, an mBAF plot with non-informative homozygous SNPs removed and with superimposed segmentation line, and a log R ratio plot with all SNPs with average log R ratios within mBAF segments superimposed.
     * A file for each sample with two plots for the whole genome: a plot with segmented mBAF and a plot with average log R ratios within mBAF segments.