Changes between Version 46 and Version 47 of PluginDownload

Timestamp:

Jan 25, 2008, 10:39:37 PM (16 years ago)

Author:

Jari Häkkinen

Comment:

Added APT plug-in.

PluginDownload

@@ -14 +14 @@
  ''Normalization''::
    [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
-    ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]). Works with BASE '''2.0 and later'''
+    ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]).  The Plier algorithm in this plug-in is superseeded by the [http://madr.lcb.uu.se/browser/plugins/se/uu/lcb/APT/tags/0.2 APT] plug-in. Works with BASE '''2.0 and later''' [[br]]
+   [http://madr.lcb.uu.se/browser/plugins/se/uu/lcb/APT/tags/0.2 APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''
  ''Filter''::
  ''Analysis''::
@@ -25 +26 @@
    [wiki:uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter]: Import annotation type annd controlled vocabularies from a simple flat file into base 2. Works with BASE '''2.0 and later'''[[BR]]
    [wiki:nl.unimaas.bigcat.GCRMA GCRMA]:  Works with BASE '''2.0 and later'''[[BR]]
-   [wiki:se.lu.onk.BAFsegmentation BAFsegmentation]: Segments B allele frequencies from SNP arrays to identify regions of allelic imbalance.
+   [wiki:se.lu.onk.BAFsegmentation BAFsegmentation]: Segments B allele frequencies from SNP arrays to identify regions of allelic imbalance. '''Not released yet'''
 
 == BASE 1.2 plug-ins ==