Timeline



Jul 6, 2015:

8:30 AM Changeset [3439] by olle
Refs #792. DNA/RNA registration/quantification wizard updated to set …

Jul 3, 2015:

4:04 PM Changeset [3438] by olle
Refs #792. The DNA/RNA registration/quantification wizard updated to …
11:25 AM Changeset [3437] by olle
Refs #792. The DNA/RNA registration/quantification wizard updated to …

Jul 2, 2015:

4:32 PM Changeset [3436] by olle
Refs #792. Lab tracking (protocol/)report for Allprep isolation …
11:41 AM Changeset [3435] by olle
Refs #792. Registration wizard for extra material updated to check for …

Jun 29, 2015:

1:03 PM Changeset [3434] by olle
Refs #792. MeLuDI updated in case summary to report start lists …
12:40 PM Changeset [3433] by olle
Refs #792. MeLuDI sample preparation code refactored: 1. Utility …
9:40 AM Changeset [3432] by olle
Refs #792. MeLuDI updated in main sample preparation wizards to use …
8:30 AM Changeset [3431] by olle
Refs #792. MeLuDI updated by preparing for use of ItemList objects …
8:00 AM Changeset [3430] by olle
Refs #792. MeLuDI updated by adding new ItemList annotations for …

Jun 26, 2015:

12:53 PM net.sf.basedb.thumbnails edited by Nicklas Nordborg
(diff)
12:49 PM Milestone Thumbnails v1.0 completed
Extension for displaying thumbnails images and other files in the file …
12:49 PM net.sf.basedb.thumbnails edited by Nicklas Nordborg
README should point to the tagged version (diff)
12:47 PM PluginDownload edited by Nicklas Nordborg
Released Thumbnails 1.0 (diff)
12:44 PM net.sf.basedb.thumbnails edited by Nicklas Nordborg
Released Thumbnails 1.0 (diff)
12:40 PM thumbnails-1.0.tar.gz attached to net.sf.basedb.thumbnails by Nicklas Nordborg
Thumbnails 1.0
12:38 PM Changeset [3429] by Nicklas Nordborg
Tagging Thumbnails 1.0
12:37 PM Changeset [3428] by Nicklas Nordborg
Preparing to release Thumbnails 1.0
11:49 AM Ticket #793 (Implement thumbnails for PNG and JPG images) closed by Nicklas Nordborg
fixed
11:48 AM net.sf.basedb.thumbnails/install edited by Nicklas Nordborg
Adding note about Java 8 (diff)
11:46 AM net.sf.basedb.thumbnails edited by Nicklas Nordborg
Adding note about Java 8 (diff)
11:44 AM net.sf.basedb.thumbnails/using created by Nicklas Nordborg
Created page about using the thumbnails extension
11:34 AM net.sf.basedb.thumbnails edited by Nicklas Nordborg
Listing support file formats (diff)
11:32 AM net.sf.basedb.thumbnails/install edited by Nicklas Nordborg
(diff)
11:32 AM net.sf.basedb.thumbnails/install created by Nicklas Nordborg
Creating installation instructions page
11:30 AM net.sf.basedb.thumbnails edited by Nicklas Nordborg
Adding links to documentation pages (diff)
11:26 AM Changeset [3427] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Checking …

Jun 25, 2015:

1:28 PM Changeset [3426] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Fixes a …
11:39 AM Changeset [3425] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Cleaned up a …
8:16 AM Ticket #800 (Add counter for total number of scored histology samples) closed by Nicklas Nordborg
fixed: (In [3424]) Fixes #800: Add counter for total number of scored …
8:16 AM Changeset [3424] by Nicklas Nordborg
Fixes #800: Add counter for total number of scored histology samples
8:08 AM Ticket #800 (Add counter for total number of scored histology samples) created by Nicklas Nordborg
In the top left table with counters for various items it would be nice …

Jun 24, 2015:

4:29 PM Changeset [3423] by olle
Refs #792. In order for case summary to work for extra material items …
2:35 PM Changeset [3422] by Nicklas Nordborg
References #795: Display image thumbnails in list view for stained …
2:34 PM Changeset [3421] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Add a …
1:37 PM Ticket #798 (Display thumbnail of gene report pdf in raw bioassays list and view page) closed by Nicklas Nordborg
fixed: (In [3420]) Fixes #798: Display thumbnail of gene report pdf in raw …
1:37 PM Changeset [3420] by Nicklas Nordborg
Fixes #798: Display thumbnail of gene report pdf in raw bioassays list …
12:50 PM Ticket #799 (TypeError: bestStain is null in case summary) closed by Nicklas Nordborg
fixed: (In [3419]) Fixes #799: TypeError?: bestStain is null in case summary …
12:50 PM Changeset [3419] by Nicklas Nordborg
Fixes #799: TypeError?: bestStain is null in case summary It was a bug …
12:38 PM Ticket #799 (TypeError: bestStain is null in case summary) created by Nicklas Nordborg
Seems like it happens for cases that not yet been stained or is …
10:49 AM Ticket #798 (Display thumbnail of gene report pdf in raw bioassays list and view page) created by Nicklas Nordborg
More or less the same as #795 and #796 but in this case we check the …
10:44 AM Changeset [3418] by olle
Refs #792. Data access object class/file SpecimenTube.java in …
9:41 AM Ticket #797 (Implement thumbnails for PDF documents) closed by Nicklas Nordborg
fixed: (In [3417]) Fixes #797: Implement thumbnails for PDF documents The …
9:41 AM Changeset [3417] by Nicklas Nordborg
Fixes #797: Implement thumbnails for PDF documents The Apache PDF box …
7:49 AM Ticket #797 (Implement thumbnails for PDF documents) created by Nicklas Nordborg
https://java.net/projects/pdf-renderer or https://pdfbox.apache.org/

Jun 23, 2015:

12:39 PM Ticket #796 (Filter on image present/not present for stained samples) closed by Nicklas Nordborg
fixed
12:37 PM Changeset [3416] by olle
Refs #792. Java servlet classes/files updated by referring to a single …
12:35 PM Ticket #790 (Add new site: Jönköping) closed by Nicklas Nordborg
fixed: (In [3415]) Fixes #790: Add new site: Jönköping
12:35 PM Changeset [3415] by Nicklas Nordborg
Fixes #790: Add new site: Jönköping
11:58 AM Changeset [3414] by olle
Refs #792. Lab tracking protocol for Allprep isolation wizard updated …
11:06 AM Changeset [3413] by olle
Refs #792. Lab tracking protocol for Allprep isolation wizard updated …

Jun 22, 2015:

2:51 PM Changeset [3412] by olle
Refs #792. MeLuDI updated by adding registration of extra material: …

Jun 18, 2015:

2:53 PM Changeset [3411] by Nicklas Nordborg
References #795 and #796: Display image thumbnails in list view for …
8:18 AM Changeset [3410] by Nicklas Nordborg
References #795: Display image thumbnails in list view for stained …
8:15 AM Changeset [3409] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images …

Jun 17, 2015:

1:28 PM Changeset [3408] by olle
Refs #792. One new site, "Trelleborg", added, belonging to RCC-syd: …

Jun 16, 2015:

2:43 PM Ticket #796 (Filter on image present/not present for stained samples) created by Nicklas Nordborg
Ticket #795 added a column displaying a thumbnail of the histology …
2:32 PM Ticket #795 (Display image thumbnails in list view for stained samples) closed by Nicklas Nordborg
fixed: (In [3407]) Fixes #795: Display image thumbnails in list view for …
2:32 PM Changeset [3407] by Nicklas Nordborg
Fixes #795: Display image thumbnails in list view for stained samples
2:12 PM Ticket #795 (Display image thumbnails in list view for stained samples) created by Nicklas Nordborg
Ticket #791 added support for uploading histology images to BASE. It …
1:30 PM Ticket #794 (Improve visual difference between samples missing/having IHC annotation) closed by Nicklas Nordborg
fixed: (In [3406]) Fixes #794: Improve visual difference between samples …
1:30 PM Changeset [3406] by Nicklas Nordborg
Fixes #794: Improve visual difference between samples missing/having …
1:29 PM Ticket #794 (Improve visual difference between samples missing/having IHC annotation) created by Nicklas Nordborg
In the Histology scoring wizard a "star" icon is used to indicate the …
1:00 PM Changeset [3405] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Catch …
11:24 AM Changeset [3404] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Only …
9:39 AM Changeset [3403] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Added a …

Jun 15, 2015:

2:35 PM Changeset [3402] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Making …
2:14 PM Changeset [3401] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Added …
12:40 PM Changeset [3400] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images Added …
9:38 AM Changeset [3399] by Nicklas Nordborg
References #793: Implement thumbnails for PNG and JPG images First …
8:35 AM Ticket #793 (Implement thumbnails for PNG and JPG images) created by Nicklas Nordborg
8:34 AM Changeset [3398] by Nicklas Nordborg
Initial checkin of Thumbnails extension. It should compile and install …
7:52 AM Changeset [3397] by Nicklas Nordborg
Creating tags folder for 'net.sf.basedb.thumbnails'.
7:51 AM Changeset [3396] by Nicklas Nordborg
Creating trunk folder for 'net.sf.basedb.thumbnails'.
7:51 AM Changeset [3395] by Nicklas Nordborg
Creating root folder for 'net.sf.basedb.thumbnails'.
7:49 AM net.sf.basedb.thumbnails created by Nicklas Nordborg

Jun 12, 2015:

1:49 PM Ticket #772 (New sample annotation (LinkedSpecimen) to highlight prior specimen) closed by Nicklas Nordborg
fixed: (In [3394]) Fixes #772: New sample annotation (LinkedSpecimen?) to …
1:49 PM Changeset [3394] by Nicklas Nordborg
Fixes #772: New sample annotation (LinkedSpecimen?) to highlight prior …

Jun 11, 2015:

11:08 AM Changeset [3393] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Fixing issue …
11:04 AM Changeset [3392] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Remove …
11:03 AM Changeset [3391] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Finding …
8:53 AM Changeset [3390] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Changed …
8:19 AM Changeset [3389] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Adding …
8:13 AM Changeset [3388] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Using a …

Jun 10, 2015:

1:52 PM Changeset [3387] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Load files …
1:37 PM Changeset [3386] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction The …
11:47 AM Changeset [3385] by olle
Refs #792. MeLuDI updated to be able to be used with BASE version 3.5. …
11:19 AM Changeset [3384] by olle
Refs #792. MeLuDI updated to be able to be used with BASE version 3.5. …
9:29 AM Changeset [3383] by Nicklas Nordborg
Updating the release instructions to specify that a new checkout of …
9:05 AM Changeset [3382] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Enabling …
8:27 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
Adding Reggie 3.4 screenshot (diff)
8:25 AM reggie-3.4.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 3.4
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