Changes between Initial Version and Version 12 of Ticket #913


Ignore:
Timestamp:
Oct 21, 2016, 1:05:23 PM (8 years ago)
Author:
Nicklas Nordborg
Comment:

Update ticket description to match the implementation.

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #913

    • Property Milestone Reggie v4.x → Reggie v4.8
    • Property Summary Implements a set of wizards for handling outtakes → Implement a set of wizards for handling outtakes
    • Property Status new → assigned

  • Ticket #913 – Description

    initial v12  
    33 1. Define the outtake. An item list with RNA or DNA is used as the starting point.
    44
     5 * A name for the outtake must be specified.
    56 * A target amount and target volume is specified.
    6  * A comment field with some information about the outtake is also required.
     7 * A comment field with optional information about the outtake.
    78
    8 The wizard should create child aliquots (suffix .a, .a2, etc) for all items in the list and put them in a new "outtake list". Information that is needed for proper dilution should be calculated and stored (details need to be specified). The wizard should also create new boxes and place the aliquots in a predefined order. Typically the same order as the parent items are located in the freezer. Box names should automatically generated using a common prefix (SCAN-B?) and number. The comment should be copied to the aliquots, boxes and new list. This wizard require special permission to be used (existing or new?).
     9The wizard should create child aliquots (suffix .a, .a2, etc) for all items in the list and put them in a new "outtake list". The target amount and target volume is stored as annotations on the list. This allows us to calculate dilution information later on. The wizard should also create new boxes and place the aliquots in a predefined order. Typically the same order as the parent items are located in the freezer. Box names should automatically generated using a common prefix (`ScanB-Outtake`) and number (3 digits). The comment should be copied to the aliquots, boxes and new list. This wizard require the `PrepCurator` permission.
    910
    10  2a. Generate lab protocols. The "outtake" list is used to generate a pick list and dilution protocol. The protocol must include:
     11 2a. Generate lab protocols. The "outtake" list is used to generate a pick list and dilution protocol. This wizard require the `SamplePrep` permission. The protocol must include:
    1112
    1213 * Sample name
    … …  
    2021 2b. Generate label file for the label printer
    2122
    22  3. Registration that the outtake has been completed. The default action is that everything was successful. It should be possible to select a full or partial failure. In case of a failure it should be possible to specify (per sample) if the material was actually used or not.
     23
     24 3. Registration that the outtake has been completed. The default action is that everything was successful. It should be possible to select a full or partial failure. In case of a failure it should be possible to specify (per sample) if the material was actually used or not. This wizard require the `SamplePrep` permission.
    2325
    2426 3b. New concentration measurements? This would probably be useful but no decision was made about this.
    2527
    26  4. Generate tab-separated delivery file. This file should contain information about the shipped samples. We need to include at least the label and box positions. Estimated concentration is probably also useful. Maybe some more columns?
    27 
     28 4. Generate tab-separated delivery file. This file should contain information about the shipped samples. We need to include at least the label and box positions. Estimated concentration and quantity is probably also useful. Maybe some more columns? This wizard require the `PrepCurator` permission.