Changes between Version 1 and Version 2 of Ticket #690, comment 5


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Timestamp:
Nov 17, 2014, 2:41:34 PM (10 years ago)
Author:
olle

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  • Ticket #690, comment 5

    v1 v2  
    99 5. Sample source report.[[BR]]a. Sample count report.[[BR]]b. Patient count report.[[BR]]c. Overview report.[[BR]]d. Missing sample data report.
    1010
    11 All wizards have counterparts in Reggie:
     11All wizards have counterparts in Reggie, but not all input fields are equal:
    1212 1. The !MeLuDi installation wizard is basically just a modified version adapted to variables relevant here.
    1313 2. Case registration takes the following input:[[BR]]a. Case name.[[BR]]b. Number of tubes.[[BR]]c. Arrival date.[[BR]]d. Sampling date.[[BR]]e. Mutation analysis.[[BR]]f. Site.[[BR]]g. Sample type.[[BR]]h. Project focus.[[BR]]i. Other path note.[[BR]]Input for each specimen tube:[[BR]]j. Storage box, row, column. Values are suggested by the program. Note! Not used for the first specimen, since all amount is expected to be used for analysis.[[BR]]k. Operator delivery comment.
     
    1515 4. Case summary has been adapted to variables used in !MeLuDi.
    1616 5. Sample source reports are simplified and more or less adapted versions of Reggie counterparts:[[BR]]a. Sample count report: Number of specimens per time interval from the various sites for a chosen time period. Has a project focus filter with value "None", "Melanoma", "Lung cancer", and "unknown".[[BR]]b. Patient count report shows the number of patients per time interval from the various sites for a chosen time period.[[BR]]c. Overview report contains two tables showing data for each site for a chosen time period; one shows number of patients and specimens and the other number of patients having 1, 2, or more specimens. Has a project focus filter with value "None", "Melanoma", "Lung cancer", and "unknown".[[BR]]d. Missing sample data report shows number of specimens for each site missing patient, patient name, PAD reference, or sampling data. Has a project focus filter with value "None", "Melanoma", "Lung cancer", and "unknown".
     17
     18Input options via check boxes/menus:
     19
     20|| '''Input name''' || '''Input type''' || '''Options''' || '''Default''' ||
     21|| Mutation analysis || Check boxes || `KRAS_NRAS`, `BRAF`, `EGFR` || - ||
     22|| Site || Menu || `unknown`, `Helsingborg`, `Kristianstad`, `Linköping`, `Lund`, `Malmö` || `unknown` ||
     23|| Sample type || Menu || `unknown`, `Primary tumour`, `Metastasis`, `DNA`, `RNA` || `unknown` ||
     24|| Project focus || Menu || `unknown`, `Melanoma`, `Lung cancer` || `unknown` ||