Changes between Version 1 and Version 2 of Ticket #487, comment 9


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Timestamp:
May 3, 2013, 12:53:33 PM (11 years ago)
Author:
olle

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  • Ticket #487, comment 9

    v1 v2  
    33The INCA export file is intended to be used when requesting information from the INCA database, which contains diagnoses for cancer cases. In order to ensure that the most relevant diagnose is returned, the sample selection should be updated as follows:
    44
    5  1. All samples of subtype "`Specimen`" and "`NoSpecimen`" should be included for each laterality.
     5 1. All samples of subtype "`Specimen`" and "`NoSpecimen`" should be included for each laterality, up to one for each biopsy type and date.
    66 2. As previously, a blood sample should only be included, when no other sample subtype exist for a patient. Only the earliest blood sample should be included.
    77 3. A new column indicating the biopsy type should be included in the export file. For samples with biopsy type `null`, biopsy type should be reported as "`default`" for samples of subtype "`Specimen`" and "`NoSpecimen`", but "`not_available`" for blood samples.