Opened 15 years ago

Last modified 14 years ago

#181 closed task

Add MeV+R as a BASE extension? — at Initial Version

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: ZZ Other tickets
Component: not classified Keywords:
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Description

It may be interesting to use MeV+R for visualizing and running R scripts. Could MeV+R be added as an extension to BASE like MeV ... or should MeV+R be an extenssion to the BASE MeV extenstion?

MeV+R web site is http://expression.washington.edu/mevr/ and the research paper is open access through http://dx.doi.org/10.1186/gb-2008-9-7-r118

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis

Abstract

We present MeV+R, an integration of the JAVA MultiExperiment Viewer program with Bioconductor packages. This integration of MultiExperiment Viewer and R is easily extensible to other R packages and provides users with point and click access to traditionally command line driven tools written in R. We demonstrate the ability to use MultiExperiment Viewer as a graphical user interface for Bioconductor applications in microarray data analysis by incorporating three Bioconductor packages, RAMA, BRIDGE and iterativeBMA.

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