| 1 | = Smooth = |
| 2 | |
| 3 | Smooth can be used to reduce experimental noise over the chromosome profile. It |
| 4 | uses a sliding window over the chromosome where the size of the window is either |
| 5 | a number of clones or basepairs. If basepairs is choosen a clone is |
| 6 | inside the window if more then half of the gene is inside. Each clone is fitted |
| 7 | to the local median or mean in the window and the user can choose the impact by |
| 8 | using a simple weight. The correction of each spot is exported as an extra float |
| 9 | JE_smoothdiff. |
| 10 | |
| 11 | [source:se/lu/onk/Smooth/doc/INSTALL.txt INSTALL] |
| 12 | |
| 13 | [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Smooth/smooth_179.zip?format=raw Download latest] |