= Updating to Reggie 2.15 =

The following items should be performed after updating to Reggie 2.15.

=== 1. Remove incorrectly registered `SequencingRun` items ===

All `SequencingRun` items registered with Reggie 2.14 are incorrectly registered. The easiest way to fix this is to remove all existing
`SequencingRun` and use Reggie 2.15 to redo the registration. The following steps should work:


 1. Go to '''View->Derived bioassays'''.
 2. Make an export of all columns in case comments, annotations and other information is needed when re-registering.
 3. Select all `SequencingRun` items.
 4. Use '''Set owner''' to take ownership of all selected items (to make it easier to delete them from the trashcan).
 5. Click '''Delete'''. This should put all selected `SequencingRun` items in the traschcan.
 6. Go to '''View->Trashcan''' and finalize the deletion.

=== 2. Redo the sequencing startup registration ===

The delete information about `SequencingRun` items need to be re-registered using the '''Register sequencing started''' wizard.
The wizard should be completed once for each flow cell (no pair-wise registration).

 1. Go to '''Extensions->Reggie''' and start the '''Register sequencing started''' wizard.
 2. '''Operator''' and '''Comments''' can be copied from the information that was exported in step 1.2 above.
 3. All other information is retreived from the `runParameters.xml` file that is created by the !HiSeq for each sequencing run.
 4. Finish the wizard and repeat for each flow cell.

The '''Register sequencing ended''' and '''Confirm sequencing completed''' wizards can then be used to finalize the registration for each of the sequencing runs.