= Plug-in download = This page provides easy access to BASE 1 and 2 plug-ins for users who prefer not to use the subversion repository for downloading the plug-ins The latest stable BASE can be downloaded from the [http://base.thep.lu.se/ BASE 2 development site]. The latest BASE 1 release is availabe from [http://base1.thep.lu.se BASE 1.2.x development site] and the latest [http://baseplugins.thep.lu.se/attachment/wiki/PluginDownload/BASE-plugindevkit-1.2.17.tar.gz?format=raw BASE 1.2 plug-in development kit] may be needed for some of the BASE 1 plug-ins. == BASE 2 plug-ins == Plug-ins created for BASE 2.2 and later will not work with BASE 1.x. ''Quality Control (QC)'':: ''Transformation'':: ''Normalization'':: [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]). Works with BASE '''2.0 and later''' ''Filter'':: ''Analysis'':: ''Other'':: [wiki:uk.ac.scri.batchimporter BatchDataImporter]: Imports batches of data files into BASE, creating a single !RawbioAssay for each file. Works with BASE '''2.2 and later''' [[br]] [wiki:se.lu.thep.webservices_clients WebServices]: Experimental web services clients for [http://base.thep.lu.se/browser/branches/webservices BASE web services branch]. Perl and R are supported through this plug-in. [[br]] [wiki:uk.ac.ebi.Tab2MageImporter Tab2MageImporter]: Imports raw data files and an experiment meta-data in the tab2mage specification into base 2. Works with BASE '''2.2 and later''' [[BR]] [wiki:uk.ac.ebi.Tab2MageExporter Tab2MageExporter]: Exports an experiment meta-data in the tab2mage specification from base 2. Works with BASE '''2.2 and later''' [[BR]] [wiki:uk.ac.ebi.AffyArrayDesignBatchImporter AffyArrayDesignBatchImporter]: Imports batches of affymetrix array design into base 2. Works with BASE '''2.2 and later''' [[BR]] [wiki:uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter]: Import annotation type annd controlled vocabularies from a simple flat file into base 2. Works with BASE '''2.0 and later''' == BASE 1.2 plug-ins == Plug-ins created for BASE 1.2 can be made to work in BASE 2 using the Base1PluginExecuter plug-in (this is still in development phase). ''Quality Control (QC)'':: ''Transformation'':: [wiki:se.lu.onk.MergeBioAssay Merge BioAssay]: Works with BASE '''1.2.17+'''[[BR]] [wiki:se.lu.onk.Smooth Smooth]: Works with BASE '''1.2.17+'''[[BR]] [wiki:WeNNI WeNNI]: Missing value imputation ([http://baseplugins.thep.lu.se/attachment/wiki/WeNNI/wenni-0.6.tar.gz?format=raw download latest]). Works with BASE '''1.2.17+''' ''Normalization'':: ''Filter'':: ''Analysis'':: [wiki:se.lu.onk.ZTest One class Z-test]: Works with BASE '''1.2.17+'''[[BR]] ''Other''::