Timeline



Oct 4, 2023:

2:42 PM Tickets #1528,​1529 batch updated by Nicklas Nordborg
In 7366: […]
2:42 PM Changeset [7366] by Nicklas Nordborg
References #1528 and #1529. New version of the ASCAT container.

Oct 3, 2023:

1:52 PM Ticket #1528 (Fix for ASCAT crasches) updated by Nicklas Nordborg
In 7365: […]
1:52 PM Changeset [7365] by Nicklas Nordborg
References #1528: Fix for ASCAT crasches Save the ascat.bc object …
11:48 AM Ticket #1529 (Add grid lines to the ASCAT sunrise plots) created by Nicklas Nordborg
NOTE! Changes in this ticket mainly affect the ASCAT fork on Github. …
11:46 AM Ticket #1528 (Fix for ASCAT crasches) created by Nicklas Nordborg
NOTE! Changes in this ticket mainly affect the ASCAT fork on Github. …

Sep 20, 2023:

1:57 PM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) closed by Nicklas Nordborg
fixed
1:26 PM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7364: […]
1:26 PM Changeset [7364] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
9:41 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7363: […]
9:41 AM Changeset [7363] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
9:32 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7362: […]
9:32 AM Changeset [7362] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …

Sep 19, 2023:

2:40 PM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7361: […]
2:40 PM Changeset [7361] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
1:37 PM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7360: […]
1:37 PM Changeset [7360] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
11:52 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7359: […]
11:52 AM Changeset [7359] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
11:14 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7358: […]
11:14 AM Changeset [7358] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …

Sep 18, 2023:

2:41 PM Ticket #1527 (The table view extension should not be enabled for all text/* files) closed by Nicklas Nordborg
fixed: In 7357: […]
2:41 PM Changeset [7357] by Nicklas Nordborg
Fixes #1527: The table view extension should not be enabled for all …
2:37 PM Ticket #1527 (The table view extension should not be enabled for all text/* files) created by Nicklas Nordborg
The table view extension takes a text file and assumes that it …
2:16 PM Ticket #1526 (The INCA XML to CSV converter should be packaged as a zip file) closed by Nicklas Nordborg
fixed: In 7356: […]
2:16 PM Changeset [7356] by Nicklas Nordborg
Fixes #1526: The INCA XML to CSV converter should be packaged as a zip file
2:16 PM Ticket #1526 (The INCA XML to CSV converter should be packaged as a zip file) created by Nicklas Nordborg
This is easier to unpack on Windows computers with 7-zip. The .tar.gz …
11:08 AM Ticket #1524 (Improve performance for the stray files wizard) closed by Nicklas Nordborg
fixed: In 7355: […]
11:08 AM Changeset [7355] by Nicklas Nordborg
Fixes #1524: Improve performance for the stray files wizard The …
11:04 AM Ticket #1524 (Improve performance for the stray files wizard) updated by Nicklas Nordborg
In 7354: […]
11:04 AM Changeset [7354] by Nicklas Nordborg
References #1524: Improve performance for the stray files wizard …
8:53 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7353: […]
8:53 AM Changeset [7353] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
8:42 AM Ticket #1525 (Add support for setting job options that is a flag) closed by Nicklas Nordborg
fixed: In 7352: […]
8:42 AM Changeset [7352] by Nicklas Nordborg
Fixes #1525: Add support for setting job options that is a flag
8:31 AM Ticket #1525 (Add support for setting job options that is a flag) created by Nicklas Nordborg
The JobConfig class have support for setting options that are in the …

Sep 15, 2023:

1:27 PM Ticket #1524 (Improve performance for the stray files wizard) created by Nicklas Nordborg
The stray files wizard start by loading the DataFilesFolder

Sep 14, 2023:

10:54 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7351: […]
10:54 AM Changeset [7351] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
8:58 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7350: […]
8:58 AM Changeset [7350] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
8:39 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7349: […]
8:39 AM Changeset [7349] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …

Sep 13, 2023:

2:01 PM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7348: […]
2:01 PM Changeset [7348] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
1:53 PM Ticket #1523 (Remove the example configuration for the old OpenGrid cluster from ...) closed by Nicklas Nordborg
fixed: In 7347: […]
1:53 PM Changeset [7347] by Nicklas Nordborg
Fixes #1523: Remove the example configuration for the old OpenGrid
12:01 PM Ticket #1523 (Remove the example configuration for the old OpenGrid cluster from ...) created by Nicklas Nordborg
We have been using the new Slurm cluster a long time now, and the old …
11:59 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) updated by Nicklas Nordborg
In 7346: […]
11:59 AM Changeset [7346] by Nicklas Nordborg
References #1522: Add support for setting more options for submitting …
9:10 AM Ticket #1522 (Add support for setting more options for submitting jobs to the cluster) created by Nicklas Nordborg
When submitting jobs to the cluster we need to specify some options …

Sep 11, 2023:

1:47 PM Changeset [7345] by Nicklas Nordborg
Merge Reggie 4.49.2 to the trunk.
1:45 PM Milestone Reggie v4.49.2 completed
Bug fixes and enhancements for Reggie 4.49.1. Revision Log: …
1:45 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.49.2 (diff)
1:44 PM reggie-4.49.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.49.2
1:39 PM Changeset [7344] by Nicklas Nordborg
Tagging Reggie 4.49.2
1:38 PM Changeset [7343] by Nicklas Nordborg
Preparing to release Reggie 4.49.2
1:37 PM Ticket #1521 (The Secondary analysis cleanup wizard need to support more item types) closed by Nicklas Nordborg
fixed: In 7342: […]
1:37 PM Changeset [7342] by Nicklas Nordborg
Fixes #1521: The Secondary analysis cleanup wizard need to support …
12:01 PM Ticket #1521 (The Secondary analysis cleanup wizard need to support more item types) created by Nicklas Nordborg
It currently has support for * DemuxedSequences * …
11:35 AM Changeset [7341] by Nicklas Nordborg
Merge Reggie 4.49.1 to the trunk
11:31 AM Milestone Reggie v4.49.1 completed
Bug fixes and enhancements for Reggie 4.49. Revision Log: …
11:31 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.49.1 (diff)
11:29 AM reggie-4.49.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.49.1
11:28 AM Changeset [7340] by Nicklas Nordborg
Tagging Reggie 4.49.1
11:27 AM Changeset [7339] by Nicklas Nordborg
Preparing to release Reggie 4.49.1
9:55 AM Tickets #1515,​1519,​1520 batch updated by Nicklas Nordborg
fixed
9:12 AM Ticket #1520 (Output a file with values used in the allelic imbalance test) updated by Nicklas Nordborg
In 7338: […]
9:12 AM Changeset [7338] by Nicklas Nordborg
References #1520: Output a file with values used in the allelic …
7:56 AM Ticket #1519 (Add support for using "bimodality_coefficient" as a test for allelic ...) updated by Nicklas Nordborg
In 7337: […]
7:56 AM Changeset [7337] by Nicklas Nordborg
References #1519: Add support for using "bimodality_coefficient" as a …

Sep 8, 2023:

1:47 PM Ticket #1520 (Output a file with values used in the allelic imbalance test) updated by Nicklas Nordborg
In 7336: […]
1:47 PM Changeset [7336] by Nicklas Nordborg
References #1520: Output a file with values used in the allelic …
1:01 PM Ticket #1519 (Add support for using "bimodality_coefficient" as a test for allelic ...) updated by Nicklas Nordborg
In 7335: […]
1:01 PM Changeset [7335] by Nicklas Nordborg
References #1519: Add support for using "bimodality_coefficient" as a …
11:14 AM Ticket #1520 (Output a file with values used in the allelic imbalance test) created by Nicklas Nordborg
Since it takes a while to test different values for the tau
11:11 AM Ticket #1519 (Add support for using "bimodality_coefficient" as a test for allelic ...) updated by Nicklas Nordborg
In 7334: […]
11:10 AM Changeset [7334] by Nicklas Nordborg
References #1519: Add support for using "bimodality_coefficient" as a …

Sep 7, 2023:

1:52 PM Ticket #1519 (Add support for using "bimodality_coefficient" as a test for allelic ...) updated by Nicklas Nordborg
In 7333: […]
1:52 PM Changeset [7333] by Nicklas Nordborg
References #1519: Add support for using "bimodality_coefficient" as a …
1:50 PM Ticket #1519 (Add support for using "bimodality_coefficient" as a test for allelic ...) updated by Nicklas Nordborg
In 7332: […]
1:50 PM Changeset [7332] by Nicklas Nordborg
References #1519: Add support for using "bimodality_coefficient" as a …
1:40 PM Ticket #1519 (Add support for using "bimodality_coefficient" as a test for allelic ...) updated by Nicklas Nordborg
In 7331: […]
1:40 PM Changeset [7331] by Nicklas Nordborg
References #1519: Add support for using "bimodality_coefficient" as a …

Sep 6, 2023:

6:51 AM Ticket #1519 (Add support for using "bimodality_coefficient" as a test for allelic ...) created by Nicklas Nordborg
The bimodality_coefficient() is part of the mousetrap R package, …

Sep 4, 2023:

2:56 PM Ticket #1517 (Add support for setting the "minCounts" parameter in the call to ...) closed by Nicklas Nordborg
fixed: In 7330: […]
2:56 PM Changeset [7330] by Nicklas Nordborg
Fixes #1517: Add support for setting the "minCounts" parameter in the …
2:54 PM Ticket #1518 (Submitting multiple types of jobs as a single batch) closed by Nicklas Nordborg
fixed: In 7329: […]
2:54 PM Changeset [7329] by Nicklas Nordborg
Fixes #1518: Submitting multiple types of jobs as a single batch
11:26 AM Ticket #1518 (Submitting multiple types of jobs as a single batch) created by Nicklas Nordborg
After the demux (or FASTQ import) multiple jobs are started by the …
11:16 AM Ticket #1517 (Add support for setting the "minCounts" parameter in the call to ...) created by Nicklas Nordborg
This is similar to #1516.
9:08 AM Ticket #1516 (Add support for setting the "penalty" parameter in the call to ...) closed by Nicklas Nordborg
fixed: In 7328: […]
9:08 AM Changeset [7328] by Nicklas Nordborg
Fixes #1516: Add support for setting the "penalty" parameter in the …
7:43 AM Ticket #1516 (Add support for setting the "penalty" parameter in the call to ...) created by Nicklas Nordborg
We noticed that there were some samples that wasn't segmented in …
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