Timeline
May 16, 2023:
- 2:58 PM Ticket #1405 (Get rid of code using the window.event object) updated by
- In 7172: […]
- 2:58 PM Changeset [7172] by
- References #1405: Add a link to view the JSON file for specimen that …
May 15, 2023:
- 8:38 AM Changeset [7171] by
- 8:36 AM Ticket #1481 (Lab protocol for moving samples between transport and storage boxes) updated by
-
Summary changed
- 7:43 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7170: […]
- 7:43 AM Changeset [7170] by
- References #1480: Create import wizard for transfer of external …
May 12, 2023:
- 1:19 PM Changeset [7169] by
- Creating bugfix branch for Reggie 4.46
- 1:03 PM Ticket #1486 (Add an option to run the older bwa-mem instead of bwa-mem2) created by
- There are some issues with bwa-mem2 that causes it to crash. It is …
- 11:32 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7168: […]
- 11:32 AM Changeset [7168] by
- References #1480: Create import wizard for transfer of external …
- 9:59 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7167: […]
- 9:59 AM Changeset [7167] by
- References #1480: Create import wizard for transfer of external …
- 9:46 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7166: […]
- 9:46 AM Changeset [7166] by
- References #1480: Create import wizard for transfer of external …
- 9:12 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7165: […]
- 9:12 AM Changeset [7165] by
- References #1480: Create import wizard for transfer of external …
- 8:51 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7164: […]
- 8:51 AM Changeset [7164] by
- References #1480: Create import wizard for transfer of external …
- 8:33 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7163: […]
- 8:33 AM Changeset [7163] by
- References #1480: Create import wizard for transfer of external …
- 8:29 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7162: […]
- 8:29 AM Changeset [7162] by
- References #1480: Create import wizard for transfer of external …
May 11, 2023:
- 2:43 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7161: […]
- 2:43 PM Changeset [7161] by
- References #1480: Create import wizard for transfer of external …
- 9:32 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7160: […]
- 9:32 AM Changeset [7160] by
- References #1480: Create import wizard for transfer of external …
- 9:01 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7159: […]
- 9:01 AM Changeset [7159] by
- References #1480: Create import wizard for transfer of external …
May 10, 2023:
- 1:27 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7158: […]
- 1:27 PM Changeset [7158] by
- References #1480: Create import wizard for transfer of external …
- 7:58 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7157: […]
- 7:58 AM Changeset [7157] by
- References #1480: Create import wizard for transfer of external …
- 7:46 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7156: […]
- 7:46 AM Changeset [7156] by
- References #1480: Create import wizard for transfer of external …
- 7:39 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7155: […]
- 7:39 AM Changeset [7155] by
- References #1480: Create import wizard for transfer of external …
May 9, 2023:
- 9:00 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7154: […]
- 9:00 AM Changeset [7154] by
- References #1480: Create import wizard for transfer of external …
- 8:56 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7153: […]
- 8:56 AM Changeset [7153] by
- References #1480: Create import wizard for transfer of external …
- 8:54 AM Ticket #1484 (Add support for searching on the ExternalRef annotation in the Case summary) updated by
- In 7152: […]
- 8:54 AM Changeset [7152] by
- References #1484: Add support for searching on the ExternalRef …
- 8:49 AM Ticket #1485 (Add a link to view the JSON file for specimen that has been imported ...) closed by
- fixed: In 7151: […]
- 8:49 AM Changeset [7151] by
- Fixes #1485: Add a link to view the JSON file for specimen that has …
- 8:37 AM Ticket #1485 (Add a link to view the JSON file for specimen that has been imported ...) created by
- 8:15 AM Ticket #1484 (Add support for searching on the ExternalRef annotation in the Case summary) closed by
- fixed: In 7150: […]
- 8:15 AM Changeset [7150] by
- Fixes #1484: Add support for searching on the ExternalRef annotation …
- 7:35 AM Ticket #1484 (Add support for searching on the ExternalRef annotation in the Case summary) created by
May 8, 2023:
- 4:40 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7149: […]
- 4:40 PM Changeset [7149] by
- References #1480: Create import wizard for transfer of external …
- 4:40 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7148: […]
- 4:40 PM Changeset [7148] by
- References #1480: Create import wizard for transfer of external …
- 2:21 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7147: […]
- 2:21 PM Changeset [7147] by
- References #1480: Create import wizard for transfer of external …
- 2:19 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7146: […]
- 2:19 PM Changeset [7146] by
- References #1480: Create import wizard for transfer of external …
May 5, 2023:
- 3:04 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7145: […]
- 3:03 PM Changeset [7145] by
- References #1480: Create import wizard for transfer of external …
- 12:49 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7144: […]
- 12:49 PM Changeset [7144] by
- References #1480: Create import wizard for transfer of external …
- 9:19 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7143: […]
- 9:19 AM Changeset [7143] by
- References #1480: Create import wizard for transfer of external …
May 4, 2023:
- 1:31 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7142: […]
- 1:31 PM Changeset [7142] by
- References #1480: Create import wizard for transfer of external …
May 2, 2023:
- 11:48 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7141: […]
- 11:48 AM Changeset [7141] by
- References #1480: Create import wizard for transfer of external …
Apr 28, 2023:
- 9:47 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7140: […]
- 9:47 AM Changeset [7140] by
- References #1480: Create import wizard for transfer of external …
Apr 27, 2023:
- 2:16 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by
- In 7139: […]
- 2:16 PM Changeset [7139] by
- References #1480: Create import wizard for transfer of external …
Apr 26, 2023:
- 1:07 PM Ticket #1479 (Add support for creating storage boxes for externally process samples) updated by
- In 7138: […]
- 1:07 PM Changeset [7138] by
- References #1479: Add support for creating storage boxes for …
Apr 25, 2023:
- 8:49 AM Ticket #1483 (Add support for using the WGS blood items in the Genotype QC wizard) created by
- When we have verified that genotype QC results from the WGS blood …
- 8:45 AM Ticket #1478 (Implement wizards for registration of samples transfered from an ...) updated by
-
Description changed
- 8:45 AM Ticket #1482 (Registration wizard for moving tubes between a transport box and a ...) created by
- See also #1478 and #1481. This wizard should register the result of …
- 8:41 AM Ticket #1481 (Lab protocol for moving samples between transport and storage boxes) created by
- See also #1478 and #1480. We will have item lists that represents a …
- 8:02 AM Ticket #1478 (Implement wizards for registration of samples transfered from an ...) updated by
-
Description changed
- 8:02 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by
-
Description changed
- 8:01 AM Ticket #1480 (Create import wizard for transfer of external samples) created by
- See also #1478. We will get information about transfered samples from …
- 7:48 AM Ticket #1479 (Add support for creating storage boxes for externally process samples) created by
- See #1478. The existing storage box creation wizard should be …
Apr 24, 2023:
- 2:57 PM Ticket #1478 (Implement wizards for registration of samples transfered from an ...) created by
- Material in the for of Specimen, Lysate, RNA, DNA and FlowThrough is …
- 12:47 PM Changeset [7137] by
- Changes for future release Reggie 4.47
- 12:46 PM Milestone Reggie v4.46 completed
- See Reggie extension page for more information.
- 12:45 PM net.sf.basedb.reggie edited by
- Released Reggie 4.46 (diff)
- 12:42 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) closed by
- fixed
- 12:41 PM Changeset [7136] by
- Tagging Reggie 4.46
- 12:41 PM Changeset [7135] by
- Preparing to release Reggie 4.46
- 9:51 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7134: […]
- 9:51 AM Changeset [7134] by
- References #1473: Implement alignment for the DNA WGS pipeline Do not …
- 9:37 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7133: […]
- 9:37 AM Changeset [7133] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 9:36 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7132: […]
- 9:36 AM Changeset [7132] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 9:34 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7131: […]
- 9:34 AM Changeset [7131] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 21, 2023:
- 2:28 PM Changeset [7130] by
- Changes for future release Variant Search 1.9
- 2:27 PM Milestone Variant Search v1.8 completed
- See Variant Search extension page for …
- 2:26 PM net.sf.basedb.varsearch edited by
- Released Variant Search 1.8 (diff)
- 2:24 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) closed by
- fixed
- 2:23 PM Changeset [7129] by
- Tagging Variant Search 1.8
- 2:22 PM Changeset [7128] by
- Preparing to release Variant Search 1.8
- 1:58 PM Changeset [7127] by
- Changes for future release Job scheduler 1.11
- 1:57 PM Milestone Job scheduler extension v1.10 completed
- See the Job scheduler extension page for …
- 1:56 PM net.sf.basedb.opengrid edited by
- Released Job scheduler extension 1.10 (diff)
- 1:52 PM Changeset [7126] by
- Tagging Job scheduler 1.10
- 1:51 PM Changeset [7125] by
- Preparing to release Job scheduler 1.10
- 12:00 PM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by
-
Milestone changed
Milestone renamed - 12:00 PM Tickets #1455,1458,1459 batch updated by
-
Milestone changed
Milestone renamed - 11:57 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) closed by
- fixed
- 11:35 AM Ticket #1476 (Implement a nice viewer for result and log files) closed by
- fixed
- 11:31 AM Ticket #1472 (Use the new service logging implementation) closed by
- fixed
- 11:30 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) closed by
- fixed
- 11:19 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7124: […]
- 11:19 AM Changeset [7124] by
- References #1473: Implement alignment for the DNA WGS pipeline Fixed …
- 9:29 AM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) closed by
- fixed: In 7123: […]
- 9:29 AM Changeset [7123] by
- Fixes #1477: The Hisat/2023 pipeline should not flag RNA items Also …
- 9:19 AM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) updated by
- In 7122: […]
- 9:19 AM Changeset [7122] by
- References #1477: The Hisat/2023 pipeline should not flag RNA items …
- 9:15 AM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) closed by
- fixed: In 7121: […]
- 9:15 AM Changeset [7121] by
- Fixes #1475: Validation of laterality fails with error if it is …
Apr 20, 2023:
- 1:29 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7120: […]
- 1:29 PM Changeset [7120] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:13 PM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) updated by
-
Milestone, Summary changed
- 1:12 PM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) created by
- The auto-confirmation for the Hisat/2023 have the same rules as the …
Apr 19, 2023:
- 12:59 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7119: […]
- 12:59 PM Changeset [7119] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 18, 2023:
- 3:37 PM Changeset [7118] by
- Implement #1476: Implement a nice viewer for result and log files …
- 9:35 AM Changeset [7117] by
- Implement #1476: Implement a nice viewer for result and log files …
Apr 17, 2023:
- 2:18 PM Changeset [7116] by
- Implement #1476: Implement a nice viewer for result and log files …
- 2:03 PM Changeset [7115] by
- Implement #1476: Implement a nice viewer for result and log files …
- 11:26 AM Ticket #1476 (Implement a nice viewer for result and log files) updated by
-
Description changed
- 11:24 AM Ticket #1476 (Implement a nice viewer for result and log files) created by
- Log files and other result files from the secondary analysis often …
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