Timeline
Apr 24, 2023:
- 2:57 PM Ticket #1478 (Implement wizards for registration of samples transfered from an ...) created by
- Material in the for of Specimen, Lysate, RNA, DNA and FlowThrough is …
- 12:47 PM Changeset [7137] by
- Changes for future release Reggie 4.47
- 12:46 PM Milestone Reggie v4.46 completed
- See Reggie extension page for more information.
- 12:45 PM net.sf.basedb.reggie edited by
- Released Reggie 4.46 (diff)
- 12:42 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) closed by
- fixed
- 12:41 PM Changeset [7136] by
- Tagging Reggie 4.46
- 12:41 PM Changeset [7135] by
- Preparing to release Reggie 4.46
- 9:51 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7134: […]
- 9:51 AM Changeset [7134] by
- References #1473: Implement alignment for the DNA WGS pipeline Do not …
- 9:37 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7133: […]
- 9:37 AM Changeset [7133] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 9:36 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7132: […]
- 9:36 AM Changeset [7132] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 9:34 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7131: […]
- 9:34 AM Changeset [7131] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 21, 2023:
- 2:28 PM Changeset [7130] by
- Changes for future release Variant Search 1.9
- 2:27 PM Milestone Variant Search v1.8 completed
- See Variant Search extension page for …
- 2:26 PM net.sf.basedb.varsearch edited by
- Released Variant Search 1.8 (diff)
- 2:24 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) closed by
- fixed
- 2:23 PM Changeset [7129] by
- Tagging Variant Search 1.8
- 2:22 PM Changeset [7128] by
- Preparing to release Variant Search 1.8
- 1:58 PM Changeset [7127] by
- Changes for future release Job scheduler 1.11
- 1:57 PM Milestone Job scheduler extension v1.10 completed
- See the Job scheduler extension page for …
- 1:56 PM net.sf.basedb.opengrid edited by
- Released Job scheduler extension 1.10 (diff)
- 1:52 PM Changeset [7126] by
- Tagging Job scheduler 1.10
- 1:51 PM Changeset [7125] by
- Preparing to release Job scheduler 1.10
- 12:00 PM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by
-
Milestone changed
Milestone renamed - 12:00 PM Tickets #1455,1458,1459 batch updated by
-
Milestone changed
Milestone renamed - 11:57 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) closed by
- fixed
- 11:35 AM Ticket #1476 (Implement a nice viewer for result and log files) closed by
- fixed
- 11:31 AM Ticket #1472 (Use the new service logging implementation) closed by
- fixed
- 11:30 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) closed by
- fixed
- 11:19 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7124: […]
- 11:19 AM Changeset [7124] by
- References #1473: Implement alignment for the DNA WGS pipeline Fixed …
- 9:29 AM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) closed by
- fixed: In 7123: […]
- 9:29 AM Changeset [7123] by
- Fixes #1477: The Hisat/2023 pipeline should not flag RNA items Also …
- 9:19 AM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) updated by
- In 7122: […]
- 9:19 AM Changeset [7122] by
- References #1477: The Hisat/2023 pipeline should not flag RNA items …
- 9:15 AM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) closed by
- fixed: In 7121: […]
- 9:15 AM Changeset [7121] by
- Fixes #1475: Validation of laterality fails with error if it is …
Apr 20, 2023:
- 1:29 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7120: […]
- 1:29 PM Changeset [7120] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:13 PM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) updated by
-
Milestone, Summary changed
- 1:12 PM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) created by
- The auto-confirmation for the Hisat/2023 have the same rules as the …
Apr 19, 2023:
- 12:59 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7119: […]
- 12:59 PM Changeset [7119] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 18, 2023:
- 3:37 PM Changeset [7118] by
- Implement #1476: Implement a nice viewer for result and log files …
- 9:35 AM Changeset [7117] by
- Implement #1476: Implement a nice viewer for result and log files …
Apr 17, 2023:
- 2:18 PM Changeset [7116] by
- Implement #1476: Implement a nice viewer for result and log files …
- 2:03 PM Changeset [7115] by
- Implement #1476: Implement a nice viewer for result and log files …
- 11:26 AM Ticket #1476 (Implement a nice viewer for result and log files) updated by
-
Description changed
- 11:24 AM Ticket #1476 (Implement a nice viewer for result and log files) created by
- Log files and other result files from the secondary analysis often …
Apr 14, 2023:
- 11:46 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7114: […]
- 11:46 AM Changeset [7114] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 9:34 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7113: […]
- 9:34 AM Changeset [7113] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 9:24 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7112: […]
- 9:24 AM Changeset [7112] by
- References #1473: Implement alignment for the DNA WGS pipeline Making …
- 7:20 AM net.sf.basedb.meludi edited by
- Updated version of README file to 1.6.0. (diff)
Apr 13, 2023:
- 1:31 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7111: […]
- 1:31 PM Changeset [7111] by
- References #1473: Implement alignment for the DNA WGS pipeline Use …
- 11:08 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7110: […]
- 11:08 AM Changeset [7110] by
- References #1473: Implement alignment for the DNA WGS pipeline All …
- 10:46 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7109: […]
- 10:46 AM Changeset [7109] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 10:39 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7108: […]
- 10:39 AM Changeset [7108] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 12, 2023:
- 1:46 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7107: […]
- 1:45 PM Changeset [7107] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 11:27 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7106: […]
- 11:27 AM Changeset [7106] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 11, 2023:
- 1:35 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7105: […]
- 1:35 PM Changeset [7105] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 1:20 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7104: […]
- 1:20 PM Changeset [7104] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 1:16 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7103: […]
- 1:16 PM Changeset [7103] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 11:34 AM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) created by
- Normally, the laterality is allowed to be missing in a JSON file since …
Apr 6, 2023:
- 1:42 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7102: […]
- 1:42 PM Changeset [7102] by
- References #1473: Implement alignment for the DNA WGS pipeline Remove …
- 1:14 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7101: […]
- 1:14 PM Changeset [7101] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 12:54 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7100: […]
- 12:54 PM Changeset [7100] by
- References #1473: Implement alignment for the DNA WGS pipeline Better …
- 12:44 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7099: […]
- 12:44 PM Changeset [7099] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 8:58 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7098: […]
- 8:58 AM Changeset [7098] by
- References #1473: Implement alignment for the DNA WGS pipeline …
Apr 5, 2023:
- 8:49 AM Changeset [7097] by
- Merge Reggie 4.45.2 to the trunk.
- 8:47 AM Milestone Reggie v4.45.2 completed
- Bug fixes and enhancements for Reggie 4.45.1. Revision Log: …
- 8:46 AM net.sf.basedb.reggie edited by
- Released Reggie 4.45.2 (diff)
- 8:44 AM Changeset [7096] by
- Tagging Reggie 4.45.2
- 8:43 AM Changeset [7095] by
- Preparing to release Reggie 4.45.2
- 8:40 AM Ticket #1461 (Temporarily disable importing of sampling and RNA later date in the ...) updated by
- The dates can't be used and the code has been removed in #1474 [7094].
- 8:40 AM Ticket #1474 (Stop importing of "Arrival date" from JSON files) closed by
- fixed: In 7094: […]
- 8:40 AM Changeset [7094] by
- Fixes #1474: Stop importing of "Arrival date" from JSON files Also …
- 8:32 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7093: […]
- 8:32 AM Changeset [7093] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 4, 2023:
- 2:23 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7092: […]
- 2:23 PM Changeset [7092] by
- References #1473: Implement alignment for the DNA WGS pipeline First …
- 11:01 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7091: […]
- 11:01 AM Changeset [7091] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 10:56 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7090: […]
- 10:56 AM Changeset [7090] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 8:36 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7089: […]
- 8:36 AM Changeset [7089] by
- References #1473: Implement alignment for the DNA WGS pipeline Copy …
Apr 3, 2023:
- 2:12 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7088: […]
- 2:12 PM Changeset [7088] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:55 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7087: […]
- 1:55 PM Changeset [7087] by
- References #1473: Implement alignment for the DNA WGS pipeline The …
Mar 31, 2023:
- 1:28 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7086: […]
- 1:28 PM Changeset [7086] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:24 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7085: […]
- 1:24 PM Changeset [7085] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Mar 28, 2023:
- 2:00 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7084: […]
- 2:00 PM Changeset [7084] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:20 PM Ticket #1462 (Re-enable importing of sampling and RNA later date in the JSON importer) closed by
- wontfix: The dates in the JSON doesn't represent the events. The information …
- 1:18 PM Ticket #1474 (Stop importing of "Arrival date" from JSON files) created by
- This date doesn't represent the same event as it used to.
- 8:51 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7083: […]
- 8:51 AM Changeset [7083] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 8:37 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7082: […]
- 8:37 AM Changeset [7082] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 7:45 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7081: […]
- 7:45 AM Changeset [7081] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Mar 27, 2023:
- 3:57 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) created by
- See #1464 for background. The first alignment step is done separately …
- 1:42 PM Ticket #1472 (Use the new service logging implementation) updated by
- In 7080: […]
- 1:42 PM Changeset [7080] by
- References #1472: Use the new service logging implementation Updated …
- 1:16 PM Ticket #1472 (Use the new service logging implementation) updated by
- In 7079: […]
- 1:16 PM Changeset [7079] by
- References #1472: Use the new service logging implementation Updated …
- 1:05 PM Ticket #1472 (Use the new service logging implementation) updated by
- In 7078: […]
- 1:05 PM Changeset [7078] by
- References #1472: Use the new service logging implementation Updated …
- 10:58 AM Ticket #1472 (Use the new service logging implementation) updated by
- In 7077: […]
- 10:58 AM Changeset [7077] by
- References #1472: Use the new service logging implementation Updated …
- 9:31 AM Ticket #1472 (Use the new service logging implementation) updated by
- In 7076: […]
- 9:31 AM Changeset [7076] by
- References #1472: Use the new service logging implementation Updated …
- 8:51 AM Ticket #1472 (Use the new service logging implementation) created by
- See https://base.thep.lu.se/ticket/2295
- 8:50 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by
- In 7075: […]
- 8:50 AM Changeset [7075] by
- References #1466: Switch to BASE 3.19.8 and use the new service …
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