Timeline
Apr 5, 2023:
- 8:49 AM Changeset [7097] by
- Merge Reggie 4.45.2 to the trunk.
- 8:47 AM Milestone Reggie v4.45.2 completed
- Bug fixes and enhancements for Reggie 4.45.1. Revision Log: …
- 8:46 AM net.sf.basedb.reggie edited by
- Released Reggie 4.45.2 (diff)
- 8:44 AM Changeset [7096] by
- Tagging Reggie 4.45.2
- 8:43 AM Changeset [7095] by
- Preparing to release Reggie 4.45.2
- 8:40 AM Ticket #1461 (Temporarily disable importing of sampling and RNA later date in the ...) updated by
- The dates can't be used and the code has been removed in #1474 [7094].
- 8:40 AM Ticket #1474 (Stop importing of "Arrival date" from JSON files) closed by
- fixed: In 7094: […]
- 8:40 AM Changeset [7094] by
- Fixes #1474: Stop importing of "Arrival date" from JSON files Also …
- 8:32 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7093: […]
- 8:32 AM Changeset [7093] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Apr 4, 2023:
- 2:23 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7092: […]
- 2:23 PM Changeset [7092] by
- References #1473: Implement alignment for the DNA WGS pipeline First …
- 11:01 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7091: […]
- 11:01 AM Changeset [7091] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 10:56 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7090: […]
- 10:56 AM Changeset [7090] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 8:36 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7089: […]
- 8:36 AM Changeset [7089] by
- References #1473: Implement alignment for the DNA WGS pipeline Copy …
Apr 3, 2023:
- 2:12 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7088: […]
- 2:12 PM Changeset [7088] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:55 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7087: […]
- 1:55 PM Changeset [7087] by
- References #1473: Implement alignment for the DNA WGS pipeline The …
Mar 31, 2023:
- 1:28 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7086: […]
- 1:28 PM Changeset [7086] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:24 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7085: […]
- 1:24 PM Changeset [7085] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Mar 28, 2023:
- 2:00 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7084: […]
- 2:00 PM Changeset [7084] by
- References #1473: Implement alignment for the DNA WGS pipeline …
- 1:20 PM Ticket #1462 (Re-enable importing of sampling and RNA later date in the JSON importer) closed by
- wontfix: The dates in the JSON doesn't represent the events. The information …
- 1:18 PM Ticket #1474 (Stop importing of "Arrival date" from JSON files) created by
- This date doesn't represent the same event as it used to.
- 8:51 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7083: […]
- 8:51 AM Changeset [7083] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 8:37 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7082: […]
- 8:37 AM Changeset [7082] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
- 7:45 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by
- In 7081: […]
- 7:45 AM Changeset [7081] by
- References #1473: Implement alignment for the DNA WGS pipeline Added …
Mar 27, 2023:
- 3:57 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) created by
- See #1464 for background. The first alignment step is done separately …
- 1:42 PM Ticket #1472 (Use the new service logging implementation) updated by
- In 7080: […]
- 1:42 PM Changeset [7080] by
- References #1472: Use the new service logging implementation Updated …
- 1:16 PM Ticket #1472 (Use the new service logging implementation) updated by
- In 7079: […]
- 1:16 PM Changeset [7079] by
- References #1472: Use the new service logging implementation Updated …
- 1:05 PM Ticket #1472 (Use the new service logging implementation) updated by
- In 7078: […]
- 1:05 PM Changeset [7078] by
- References #1472: Use the new service logging implementation Updated …
- 10:58 AM Ticket #1472 (Use the new service logging implementation) updated by
- In 7077: […]
- 10:58 AM Changeset [7077] by
- References #1472: Use the new service logging implementation Updated …
- 9:31 AM Ticket #1472 (Use the new service logging implementation) updated by
- In 7076: […]
- 9:31 AM Changeset [7076] by
- References #1472: Use the new service logging implementation Updated …
- 8:51 AM Ticket #1472 (Use the new service logging implementation) created by
- See https://base.thep.lu.se/ticket/2295
- 8:50 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by
- In 7075: […]
- 8:50 AM Changeset [7075] by
- References #1466: Switch to BASE 3.19.8 and use the new service …
Mar 24, 2023:
- 2:52 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by
- In 7074: […]
- 2:52 PM Changeset [7074] by
- References #1467: Switch to BASE 3.19.8 and use the new service …
Mar 21, 2023:
- 2:06 PM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) updated by
- In 7073: […]
- 2:06 PM Changeset [7073] by
- References #1470: Use multiple threads when loading existing VCF files …
- 1:29 PM Ticket #1471 (Switch to BASE 3.19.8) closed by
- fixed: In 7072: […]
- 1:29 PM Changeset [7072] by
- Fixes #1471: Switch to BASE 3.19.8
- 1:27 PM Ticket #1471 (Switch to BASE 3.19.8) created by
- So that we can use the performance improvements in …
- 9:03 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) updated by
- In [7071] Referenes #1470: Use multiple threads when loading existing …
Mar 20, 2023:
- 8:55 AM Changeset [7071] by
- Referenes #1470: Use multiple threads when loading existing VCF files …
Mar 17, 2023:
- 9:15 AM Changeset [7070] by
- Merge Reggie 4.45.1 to the trunk
- 8:59 AM net.sf.basedb.reggie edited by
- Released Reggie 4.45.1 (diff)
- 8:57 AM Changeset [7069] by
- Tagging Reggie 4.45.1
- 8:57 AM Changeset [7068] by
- Preparing to release Reggie 4.45.1
- 8:56 AM Ticket #1469 (Update VarDict to version 1.8.3) closed by
- fixed: In 7067: […]
- 8:56 AM Changeset [7067] by
- Fixes #1469: Update VarDict to version 1.8.3
- 8:50 AM Milestone Reggie v4.45.1 completed
- 7:54 AM Changeset [7066] by
- Creating bugfix branch for Reggie 4.45
- 7:54 AM Changeset [7065] by
- Incorrect path
- 7:53 AM Changeset [7064] by
- Creating bugfix branch for Reggie 4.45
- 7:52 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) created by
- This could save some time when running this wizard.
- 7:51 AM Ticket #1469 (Update VarDict to version 1.8.3) created by
- The Variant calling script crashed due to a bug in VarDict: […] …
Mar 14, 2023:
- 2:49 PM Milestone INCA XML to CSV converter 1.3 completed
- See IncaXml2Csv extension page for more …
- 10:56 AM net.sf.basedb.inca edited by
- (diff)
- 9:30 AM net.sf.basedb.inca edited by
- (diff)
- 9:29 AM net.sf.basedb.inca edited by
- Released IncaXml2Csv 1.3 (diff)
- 9:26 AM Changeset [7063] by
- Changes for future release IncaXML2CSV 1.4
- 9:24 AM Changeset [7062] by
- Tagging IncaXML2CSV 1.3
- 9:24 AM Changeset [7061] by
- Preparing to release IncaXML2CSV 1.3
- 9:15 AM Ticket #1468 (Replace the column blacklist with a whitelist) closed by
- fixed: In 7060: […]
- 9:15 AM Changeset [7060] by
- Fixes #1468: Replace the column blacklist with a whitelist
Mar 13, 2023:
- 2:44 PM Ticket #1468 (Replace the column blacklist with a whitelist) updated by
-
Description changed
- 2:42 PM Ticket #1468 (Replace the column blacklist with a whitelist) created by
- Instead of having a blacklist of columns that should be blanked when …
- 1:31 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by
- In 7059: […]
- 1:31 PM Changeset [7059] by
- References #1467: Switch to BASE 3.19.8 and use the new service …
- 1:30 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) created by
- See https://base.thep.lu.se/ticket/2295
- 11:33 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by
- In 7058: […]
- 11:33 AM Changeset [7058] by
- References #1466: Switch to BASE 3.19.8 and use the new service …
Mar 10, 2023:
- 8:59 AM Changeset [7057] by
- Changes for future release Reggie 4.46
- 8:58 AM Milestone Reggie v4.45 completed
- See Reggie extension page for more information.
- 8:57 AM net.sf.basedb.reggie edited by
- Released Reggie 4.45 (diff)
- 8:54 AM Changeset [7056] by
- Tagging Reggie 4.45
- 8:53 AM Changeset [7055] by
- Preparing to release Reggie 4.45
- 8:52 AM Tickets #1464,1465 batch updated by
- fixed
- 8:47 AM Ticket #1450 (Hisat/2023 alignments should not show up in the Genotype QC wizards) updated by
-
Summary changed
Fixed spelling mistake in the title: now-->not
Mar 9, 2023:
- 11:08 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) created by
- See https://base.thep.lu.se/ticket/2295
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