Timeline



Mar 28, 2023:

2:00 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7084: […]
2:00 PM Changeset [7084] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
1:20 PM Ticket #1462 (Re-enable importing of sampling and RNA later date in the JSON importer) closed by Nicklas Nordborg
wontfix: The dates in the JSON doesn't represent the events. The information …
1:18 PM Ticket #1474 (Stop importing of "Arrival date" from JSON files) created by Nicklas Nordborg
This date doesn't represent the same event as it used to.
8:51 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7083: […]
8:51 AM Changeset [7083] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
8:37 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7082: […]
8:37 AM Changeset [7082] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
7:45 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7081: […]
7:45 AM Changeset [7081] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …

Mar 27, 2023:

3:57 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) created by Nicklas Nordborg
See #1464 for background. The first alignment step is done separately …
1:42 PM Ticket #1472 (Use the new service logging implementation) updated by Nicklas Nordborg
In 7080: […]
1:42 PM Changeset [7080] by Nicklas Nordborg
References #1472: Use the new service logging implementation Updated …
1:16 PM Ticket #1472 (Use the new service logging implementation) updated by Nicklas Nordborg
In 7079: […]
1:16 PM Changeset [7079] by Nicklas Nordborg
References #1472: Use the new service logging implementation Updated …
1:05 PM Ticket #1472 (Use the new service logging implementation) updated by Nicklas Nordborg
In 7078: […]
1:05 PM Changeset [7078] by Nicklas Nordborg
References #1472: Use the new service logging implementation Updated …
10:58 AM Ticket #1472 (Use the new service logging implementation) updated by Nicklas Nordborg
In 7077: […]
10:58 AM Changeset [7077] by Nicklas Nordborg
References #1472: Use the new service logging implementation Updated …
9:31 AM Ticket #1472 (Use the new service logging implementation) updated by Nicklas Nordborg
In 7076: […]
9:31 AM Changeset [7076] by Nicklas Nordborg
References #1472: Use the new service logging implementation Updated …
8:51 AM Ticket #1472 (Use the new service logging implementation) created by Nicklas Nordborg
See ​https://base.thep.lu.se/ticket/2295
8:50 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7075: […]
8:50 AM Changeset [7075] by Nicklas Nordborg
References #1466: Switch to BASE 3.19.8 and use the new service …

Mar 24, 2023:

2:52 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7074: […]
2:52 PM Changeset [7074] by Nicklas Nordborg
References #1467: Switch to BASE 3.19.8 and use the new service …

Mar 21, 2023:

2:06 PM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) updated by Nicklas Nordborg
In 7073: […]
2:06 PM Changeset [7073] by Nicklas Nordborg
References #1470: Use multiple threads when loading existing VCF files …
1:29 PM Ticket #1471 (Switch to BASE 3.19.8) closed by Nicklas Nordborg
fixed: In 7072: […]
1:29 PM Changeset [7072] by Nicklas Nordborg
Fixes #1471: Switch to BASE 3.19.8
1:27 PM Ticket #1471 (Switch to BASE 3.19.8) created by Nicklas Nordborg
So that we can use the performance improvements in …
9:03 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) updated by Nicklas Nordborg
In [7071] Referenes #1470: Use multiple threads when loading existing …

Mar 20, 2023:

8:55 AM Changeset [7071] by Nicklas Nordborg
Referenes #1470: Use multiple threads when loading existing VCF files …

Mar 17, 2023:

9:15 AM Changeset [7070] by Nicklas Nordborg
Merge Reggie 4.45.1 to the trunk
8:59 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.45.1 (diff)
8:59 AM reggie-4.45.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.45.1
8:57 AM Changeset [7069] by Nicklas Nordborg
Tagging Reggie 4.45.1
8:57 AM Changeset [7068] by Nicklas Nordborg
Preparing to release Reggie 4.45.1
8:56 AM Ticket #1469 (Update VarDict to version 1.8.3) closed by Nicklas Nordborg
fixed: In 7067: […]
8:56 AM Changeset [7067] by Nicklas Nordborg
Fixes #1469: Update VarDict to version 1.8.3
8:50 AM Milestone Reggie v4.45.1 completed
7:54 AM Changeset [7066] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.45
7:54 AM Changeset [7065] by Nicklas Nordborg
Incorrect path
7:53 AM Changeset [7064] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.45
7:52 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) created by Nicklas Nordborg
This could save some time when running this wizard.
7:51 AM Ticket #1469 (Update VarDict to version 1.8.3) created by Nicklas Nordborg
The Variant calling script crashed due to a bug in VarDict: […] …

Mar 14, 2023:

2:49 PM Milestone INCA XML to CSV converter 1.3 completed
See IncaXml2Csv extension page for more …
10:56 AM net.sf.basedb.inca edited by Nicklas Nordborg
(diff)
9:30 AM net.sf.basedb.inca edited by Nicklas Nordborg
(diff)
9:29 AM net.sf.basedb.inca edited by Nicklas Nordborg
Released IncaXml2Csv 1.3 (diff)
9:27 AM IncaXml2Csv-1.3.tar.gz attached to net.sf.basedb.inca by Nicklas Nordborg
IncaXml2Csv 1.3
9:26 AM Changeset [7063] by Nicklas Nordborg
Changes for future release IncaXML2CSV 1.4
9:24 AM Changeset [7062] by Nicklas Nordborg
Tagging IncaXML2CSV 1.3
9:24 AM Changeset [7061] by Nicklas Nordborg
Preparing to release IncaXML2CSV 1.3
9:15 AM Ticket #1468 (Replace the column blacklist with a whitelist) closed by Nicklas Nordborg
fixed: In 7060: […]
9:15 AM Changeset [7060] by Nicklas Nordborg
Fixes #1468: Replace the column blacklist with a whitelist

Mar 13, 2023:

2:44 PM Ticket #1468 (Replace the column blacklist with a whitelist) updated by Nicklas Nordborg
Description changed
2:42 PM Ticket #1468 (Replace the column blacklist with a whitelist) created by Nicklas Nordborg
Instead of having a blacklist of columns that should be blanked when …
1:31 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7059: […]
1:31 PM Changeset [7059] by Nicklas Nordborg
References #1467: Switch to BASE 3.19.8 and use the new service …
1:30 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) created by Nicklas Nordborg
See ​https://base.thep.lu.se/ticket/2295
11:33 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7058: […]
11:33 AM Changeset [7058] by Nicklas Nordborg
References #1466: Switch to BASE 3.19.8 and use the new service …

Mar 10, 2023:

8:59 AM Changeset [7057] by Nicklas Nordborg
Changes for future release Reggie 4.46
8:58 AM Milestone Reggie v4.45 completed
See Reggie extension page for more information.
8:57 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.45 (diff)
8:55 AM reggie-4.45.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.45
8:54 AM Changeset [7056] by Nicklas Nordborg
Tagging Reggie 4.45
8:53 AM Changeset [7055] by Nicklas Nordborg
Preparing to release Reggie 4.45
8:52 AM Tickets #1464,​1465 batch updated by Nicklas Nordborg
fixed
8:47 AM Ticket #1450 (Hisat/2023 alignments should not show up in the Genotype QC wizards) updated by Nicklas Nordborg
Summary changed
Fixed spelling mistake in the title: now-->not

Mar 9, 2023:

11:08 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) created by Nicklas Nordborg
See https://base.thep.lu.se/ticket/2295

Mar 3, 2023:

3:39 PM net.sf.basedb.meludi.background_software_info edited by olle
(diff)
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