Timeline



Mar 20, 2023:

8:55 AM Changeset [7071] by Nicklas Nordborg
Referenes #1470: Use multiple threads when loading existing VCF files …

Mar 17, 2023:

9:15 AM Changeset [7070] by Nicklas Nordborg
Merge Reggie 4.45.1 to the trunk
8:59 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.45.1 (diff)
8:59 AM reggie-4.45.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.45.1
8:57 AM Changeset [7069] by Nicklas Nordborg
Tagging Reggie 4.45.1
8:57 AM Changeset [7068] by Nicklas Nordborg
Preparing to release Reggie 4.45.1
8:56 AM Ticket #1469 (Update VarDict to version 1.8.3) closed by Nicklas Nordborg
fixed: In 7067: […]
8:56 AM Changeset [7067] by Nicklas Nordborg
Fixes #1469: Update VarDict to version 1.8.3
8:50 AM Milestone Reggie v4.45.1 completed
7:54 AM Changeset [7066] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.45
7:54 AM Changeset [7065] by Nicklas Nordborg
Incorrect path
7:53 AM Changeset [7064] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.45
7:52 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) created by Nicklas Nordborg
This could save some time when running this wizard.
7:51 AM Ticket #1469 (Update VarDict to version 1.8.3) created by Nicklas Nordborg
The Variant calling script crashed due to a bug in VarDict: […] …

Mar 14, 2023:

2:49 PM Milestone INCA XML to CSV converter 1.3 completed
See IncaXml2Csv extension page for more …
10:56 AM net.sf.basedb.inca edited by Nicklas Nordborg
(diff)
9:30 AM net.sf.basedb.inca edited by Nicklas Nordborg
(diff)
9:29 AM net.sf.basedb.inca edited by Nicklas Nordborg
Released IncaXml2Csv 1.3 (diff)
9:27 AM IncaXml2Csv-1.3.tar.gz attached to net.sf.basedb.inca by Nicklas Nordborg
IncaXml2Csv 1.3
9:26 AM Changeset [7063] by Nicklas Nordborg
Changes for future release IncaXML2CSV 1.4
9:24 AM Changeset [7062] by Nicklas Nordborg
Tagging IncaXML2CSV 1.3
9:24 AM Changeset [7061] by Nicklas Nordborg
Preparing to release IncaXML2CSV 1.3
9:15 AM Ticket #1468 (Replace the column blacklist with a whitelist) closed by Nicklas Nordborg
fixed: In 7060: […]
9:15 AM Changeset [7060] by Nicklas Nordborg
Fixes #1468: Replace the column blacklist with a whitelist

Mar 13, 2023:

2:44 PM Ticket #1468 (Replace the column blacklist with a whitelist) updated by Nicklas Nordborg
Description changed
2:42 PM Ticket #1468 (Replace the column blacklist with a whitelist) created by Nicklas Nordborg
Instead of having a blacklist of columns that should be blanked when …
1:31 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7059: […]
1:31 PM Changeset [7059] by Nicklas Nordborg
References #1467: Switch to BASE 3.19.8 and use the new service …
1:30 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) created by Nicklas Nordborg
See ​https://base.thep.lu.se/ticket/2295
11:33 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7058: […]
11:33 AM Changeset [7058] by Nicklas Nordborg
References #1466: Switch to BASE 3.19.8 and use the new service …

Mar 10, 2023:

8:59 AM Changeset [7057] by Nicklas Nordborg
Changes for future release Reggie 4.46
8:58 AM Milestone Reggie v4.45 completed
See Reggie extension page for more information.
8:57 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.45 (diff)
8:55 AM reggie-4.45.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.45
8:54 AM Changeset [7056] by Nicklas Nordborg
Tagging Reggie 4.45
8:53 AM Changeset [7055] by Nicklas Nordborg
Preparing to release Reggie 4.45
8:52 AM Tickets #1464,​1465 batch updated by Nicklas Nordborg
fixed
8:47 AM Ticket #1450 (Hisat/2023 alignments should not show up in the Genotype QC wizards) updated by Nicklas Nordborg
Summary changed
Fixed spelling mistake in the title: now-->not

Mar 9, 2023:

11:08 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) created by Nicklas Nordborg
See https://base.thep.lu.se/ticket/2295

Mar 3, 2023:

3:39 PM net.sf.basedb.meludi.background_software_info edited by olle
(diff)

Feb 21, 2023:

9:05 AM Ticket #1464 (New pipeline for DNA whole genome sequencing) updated by Nicklas Nordborg
In 7054: […]
9:05 AM Changeset [7054] by Nicklas Nordborg
References #1464: New pipeline for DNA whole genome sequencing Added …
8:38 AM Ticket #1465 (JSON and raw FASTQ files that are submitted from external lab should ...) updated by Nicklas Nordborg
In 7053: […]
8:38 AM Changeset [7053] by Nicklas Nordborg
References #1465: JSON and raw FASTQ files that are submitted from …
8:33 AM Ticket #1464 (New pipeline for DNA whole genome sequencing) updated by Nicklas Nordborg
In 7052: […]
8:33 AM Changeset [7052] by Nicklas Nordborg
References #1464: New pipeline for DNA whole genome sequencing …
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