Timeline



Mar 13, 2023:

2:44 PM Ticket #1468 (Replace the column blacklist with a whitelist) updated by Nicklas Nordborg
Description changed
2:42 PM Ticket #1468 (Replace the column blacklist with a whitelist) created by Nicklas Nordborg
Instead of having a blacklist of columns that should be blanked when …
1:31 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7059: […]
1:31 PM Changeset [7059] by Nicklas Nordborg
References #1467: Switch to BASE 3.19.8 and use the new service …
1:30 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) created by Nicklas Nordborg
See ​https://base.thep.lu.se/ticket/2295
11:33 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
In 7058: […]
11:33 AM Changeset [7058] by Nicklas Nordborg
References #1466: Switch to BASE 3.19.8 and use the new service …

Mar 10, 2023:

8:59 AM Changeset [7057] by Nicklas Nordborg
Changes for future release Reggie 4.46
8:58 AM Milestone Reggie v4.45 completed
See Reggie extension page for more information.
8:57 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.45 (diff)
8:55 AM reggie-4.45.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.45
8:54 AM Changeset [7056] by Nicklas Nordborg
Tagging Reggie 4.45
8:53 AM Changeset [7055] by Nicklas Nordborg
Preparing to release Reggie 4.45
8:52 AM Tickets #1464,​1465 batch updated by Nicklas Nordborg
fixed
8:47 AM Ticket #1450 (Hisat/2023 alignments should not show up in the Genotype QC wizards) updated by Nicklas Nordborg
Summary changed
Fixed spelling mistake in the title: now-->not

Mar 9, 2023:

11:08 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) created by Nicklas Nordborg
See https://base.thep.lu.se/ticket/2295

Mar 3, 2023:

3:39 PM net.sf.basedb.meludi.background_software_info edited by olle
(diff)

Feb 21, 2023:

9:05 AM Ticket #1464 (New pipeline for DNA whole genome sequencing) updated by Nicklas Nordborg
In 7054: […]
9:05 AM Changeset [7054] by Nicklas Nordborg
References #1464: New pipeline for DNA whole genome sequencing Added …
8:38 AM Ticket #1465 (JSON and raw FASTQ files that are submitted from external lab should ...) updated by Nicklas Nordborg
In 7053: […]
8:38 AM Changeset [7053] by Nicklas Nordborg
References #1465: JSON and raw FASTQ files that are submitted from …
8:33 AM Ticket #1464 (New pipeline for DNA whole genome sequencing) updated by Nicklas Nordborg
In 7052: […]
8:33 AM Changeset [7052] by Nicklas Nordborg
References #1464: New pipeline for DNA whole genome sequencing …

Feb 17, 2023:

4:04 PM Ticket #1465 (JSON and raw FASTQ files that are submitted from external lab should ...) updated by Nicklas Nordborg
In 7051: […]
4:04 PM Changeset [7051] by Nicklas Nordborg
References #1465: JSON and raw FASTQ files that are submitted from …
8:40 AM Ticket #1465 (JSON and raw FASTQ files that are submitted from external lab should ...) updated by Nicklas Nordborg
In 7050: […]
8:40 AM Changeset [7050] by Nicklas Nordborg
References #1465: JSON and raw FASTQ files that are submitted from …

Feb 15, 2023:

11:23 AM Ticket #1465 (JSON and raw FASTQ files that are submitted from external lab should ...) updated by Nicklas Nordborg
In 7049: […]
11:23 AM Changeset [7049] by Nicklas Nordborg
References #1465: JSON and raw FASTQ files that are submitted from …
8:45 AM Ticket #1464 (New pipeline for DNA whole genome sequencing) updated by Nicklas Nordborg
In 7048: […]
8:45 AM Changeset [7048] by Nicklas Nordborg
References #1464: New pipeline for DNA whole genome sequencing …

Feb 14, 2023:

1:49 PM Ticket #1465 (JSON and raw FASTQ files that are submitted from external lab should ...) created by Nicklas Nordborg
Currently, the JSON file is linked with the Specimen item as remote …
1:28 PM Ticket #1464 (New pipeline for DNA whole genome sequencing) updated by Nicklas Nordborg
In 7047: […]
1:28 PM Changeset [7047] by Nicklas Nordborg
References #1464: New pipeline for DNA whole genome sequencing …
11:08 AM Ticket #1464 (New pipeline for DNA whole genome sequencing) updated by Nicklas Nordborg
In 7046: […]
11:08 AM Changeset [7046] by Nicklas Nordborg
References #1464: New pipeline for DNA whole genome sequencing Added …
9:24 AM Ticket #1464 (New pipeline for DNA whole genome sequencing) created by Nicklas Nordborg
Typically samples are paired with one blood DNA sample and one (or …

Feb 13, 2023:

1:00 PM Changeset [7045] by Nicklas Nordborg
Changes for future release Reggie 4.45
12:59 PM Milestone Reggie v4.44 completed
See Reggie extension page for more information.
12:58 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.44 (diff)
12:57 PM reggie-4.44.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.44
12:55 PM Changeset [7044] by Nicklas Nordborg
Tagging Reggie 4.44
12:54 PM Changeset [7043] by Nicklas Nordborg
Preparing to release Reggie 4.44
12:02 PM Tickets #1453,​1460 batch updated by Nicklas Nordborg
fixed
12:02 PM Ticket #1401 (Update to Open Grid/Job scheduler 1.9) updated by Nicklas Nordborg
Summary changed
12:01 PM Changeset [7042] by Nicklas Nordborg
Updated to Job Scheduler 1.9
12:00 PM Changeset [7041] by Nicklas Nordborg
Updated to Job Scheduler 1.9
11:56 AM Changeset [7040] by Nicklas Nordborg
Changes for future version Job scheduler 1.10
11:54 AM Milestone Job scheduler extension v1.9 completed
See the Job scheduler extension page for …
11:54 AM net.sf.basedb.opengrid edited by Nicklas Nordborg
Released Job scheduler extension 1.9 (diff)
11:52 AM opengrid-1.9.tar.gz attached to net.sf.basedb.opengrid by Nicklas Nordborg
Job scheduler 1.9
11:49 AM Changeset [7039] by Nicklas Nordborg
Tagging Job Scheduler extension v1.9
11:49 AM Changeset [7038] by Nicklas Nordborg
Preparing to release Job Scheduler extension v1.9
8:33 AM Ticket #1460 (Add support for BloodDNA in the Outtake wizards) updated by Nicklas Nordborg
In 7037: […]
8:33 AM Changeset [7037] by Nicklas Nordborg
References #1460: Add support for BloodDNA in the Outtake wizards …
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