Timeline
Dec 19, 2022:
- 2:02 PM Ticket #1435 (Include the "Reggie" column with a link to the "Case summary" in the ...) closed by
- fixed: In 6964: […]
- 2:02 PM Changeset [6964] by
- Fixes #1435: Include the "Reggie" column with a link to the "Case …
- 1:39 PM Ticket #1435 (Include the "Reggie" column with a link to the "Case summary" in the ...) created by
- The current implementation for adding a link to the Case summary only …
- 11:57 AM Ticket #1434 (Improve the release exporter step that searches for existing files) updated by
- In 6963: […]
- 11:57 AM Changeset [6963] by
- References #1434: Improve the release exporter step that searches for …
- 9:57 AM Ticket #1434 (Improve the release exporter step that searches for existing files) closed by
- fixed: In 6962: […]
- 9:57 AM Changeset [6962] by
- Fixes #1434: Improve the release exporter step that searches for …
- 9:32 AM Ticket #1434 (Improve the release exporter step that searches for existing files) created by
- The problem is that it takes a very long time now and there is a risk …
Dec 13, 2022:
- 1:13 PM Ticket #1433 (New paths to run-archive) closed by
- fixed: In 6961: […]
- 1:13 PM Changeset [6961] by
- Fixes #1433: New paths to run-archive
- 1:13 PM Ticket #1433 (New paths to run-archive) created by
- On the old cluster (prime) the run-archive is now under …
- 8:54 AM Changeset [6960] by
- Merge Reggie 4.41.3 to the trunk
- 8:50 AM Milestone Reggie v4.41.3 completed
- Bug fixes and enhancements for Reggie 4.41.2. Revision Log: …
- 8:50 AM net.sf.basedb.reggie edited by
- Released Reggie 4.41.3 (diff)
- 8:48 AM Changeset [6959] by
- Tagging Reggie 4.41.3
- 8:48 AM Changeset [6958] by
- Preparing to release Reggie 4.41.3
- 8:44 AM Ticket #1432 (Create a link between the specimen and the archived JSON file that was ...) closed by
- fixed: In 6957: […]
- 8:44 AM Changeset [6957] by
- Fixes #1432: Create a link between the specimen and the archived JSON …
- 7:52 AM Ticket #1432 (Create a link between the specimen and the archived JSON file that was ...) created by
- Already imported items need to be fixed manually.
Dec 12, 2022:
- 2:11 PM Ticket #1431 (More validation of library barcodes) closed by
- fixed: In 6956: […]
- 2:11 PM Changeset [6956] by
- Fixes #1431: More validation of library barcodes
- 11:48 AM Ticket #1431 (More validation of library barcodes) created by
- We discovered a case where the specified barcode in the Library …
- 8:31 AM Changeset [6955] by
- Merge Reggie 4.41.2 to the trunk
- 8:28 AM Milestone Reggie v4.41.2 completed
- Bug fixes and enhancements for Reggie 4.41.1. Revision Log: …
- 8:27 AM net.sf.basedb.reggie edited by
- Released Reggie 4.41.2 (diff)
- 8:24 AM Changeset [6954] by
- Tagging Reggie 4.41.2
- 8:24 AM Changeset [6953] by
- Preparing to release Reggie 4.41.2
- 7:55 AM Ticket #1427 (Make use of the header information in FASTQ files) closed by
- fixed
Dec 9, 2022:
- 2:05 PM Ticket #1430 (Change default group permissions for archived JSON and FASTQ files) closed by
- fixed: In 6952: […]
- 2:04 PM Changeset [6952] by
- Fixes #1430: Change default group permissions for archived JSON and …
- 2:03 PM Ticket #1430 (Change default group permissions for archived JSON and FASTQ files) created by
- The default group permissions was removed completely in #1425. I think …
- 12:01 PM Ticket #1429 (Adjust Lysate.Used quantity so that it is not more than ...) closed by
- fixed: In 6951: […]
- 12:01 PM Changeset [6951] by
- Fixes #1429: Adjust Lysate.Used quantity so that it is not more than …
- 11:44 AM Ticket #1429 (Adjust Lysate.Used quantity so that it is not more than ...) created by
- There is already a warning about this, but we should also adjust the …
- 9:37 AM Ticket #1428 (Allow some information to be different when there are multiple ...) closed by
- fixed: In 6950: […]
- 9:37 AM Changeset [6950] by
- Fixes #1428: Allow some information to be different when there are …
- 9:34 AM Ticket #1428 (Allow some information to be different when there are multiple ...) created by
- When importing specimen information from JSON files, there is the …
- 9:21 AM Ticket #1427 (Make use of the header information in FASTQ files) updated by
- In 6949: […]
- 9:21 AM Changeset [6949] by
- References #1427: Make use of the header information in FASTQ files …
Dec 8, 2022:
- 2:05 PM Ticket #1427 (Make use of the header information in FASTQ files) updated by
- In 6948: […]
- 2:05 PM Changeset [6948] by
- References #1427: Make use of the header information in FASTQ files …
- 1:29 PM Ticket #1427 (Make use of the header information in FASTQ files) updated by
- In 6947: […]
- 1:28 PM Changeset [6947] by
- References #1427: Make use of the header information in FASTQ files …
- 12:51 PM Ticket #1427 (Make use of the header information in FASTQ files) created by
- The import wizard for external JSON/FASTQ could maybe use some …
Dec 6, 2022:
- 3:56 PM Changeset [6946] by
- Merge Reggie 4.41.1 to the trunk.
- 3:52 PM Milestone Reggie v4.41.1 completed
- Bug fixes and enhancements for Reggie 4.41. Revision Log: …
- 3:52 PM net.sf.basedb.reggie edited by
- Released Reggie 4.41.1 (diff)
- 3:49 PM Changeset [6945] by
- Tagging Reggie 4.41.1
- 3:48 PM Changeset [6944] by
- Preparing to release Reggie 4.41.1
- 2:43 PM Tickets #1425,1426 batch updated by
- fixed
- 2:34 PM Ticket #1426 (Warn/fix unreasonble values for RNA remaining quantity in JSON files) updated by
- In 6943: […]
- 2:34 PM Changeset [6943] by
- References #1426: Warn/fix unreasonble values for RNA remaining …
- 1:24 PM Ticket #1425 (JSON and FASTQ files that are stored in the ImportArchive should be ...) updated by
- In 6942: […]
- 1:24 PM Changeset [6942] by
- References #1425: JSON and FASTQ files that are stored in the …
- 1:05 PM Ticket #1425 (JSON and FASTQ files that are stored in the ImportArchive should be ...) updated by
- In 6941: […]
- 1:05 PM Changeset [6941] by
- References #1425: JSON and FASTQ files that are stored in the …
- 12:01 PM Ticket #1426 (Warn/fix unreasonble values for RNA remaining quantity in JSON files) created by
- The JSON files that are imported by the "Import externally processed …
- 11:45 AM Ticket #1425 (JSON and FASTQ files that are stored in the ImportArchive should be ...) created by
- The JSON file is copied by the "Import externally processed samles" …
- 11:42 AM Ticket #1424 (Incorrect path to UCSC_hg38_knownGenes_22sep2014.gtf) closed by
- fixed: In 6940: […]
- 11:42 AM Changeset [6940] by
- Fixes #1424: Incorrect path to UCSC_hg38_knownGenes_22sep2014.gtf
- 11:35 AM Ticket #1424 (Incorrect path to UCSC_hg38_knownGenes_22sep2014.gtf) created by
- The default configuration for the legacy pipeline on the Slurm cluster …
- 8:37 AM Ticket #1423 (NullPointerException when starting Methylation beta-analysis) closed by
- fixed: In 6939: […]
- 8:37 AM Changeset [6939] by
- Fixes #1423: NullPointerException when starting Methylation beta-analysis
Dec 5, 2022:
- 2:53 PM Changeset [6938] by
- Creating bugfix branch for Reggie 4.41
- 2:51 PM Ticket #1423 (NullPointerException when starting Methylation beta-analysis) updated by
-
Milestone changed
Milestone renamed - 2:51 PM Ticket #1423 (NullPointerException when starting Methylation beta-analysis) created by
- Selecting items, and job options works, but the final registration …
- 9:57 AM Changeset [6937] by
- Changes for future relase Reggie 4.42
- 9:55 AM Milestone Reggie v4.41 completed
- See Reggie extension page for more information.
- 9:54 AM PluginDownload edited by
- Released Reggie 4.41 (diff)
- 9:54 AM net.sf.basedb.reggie edited by
- Released Reggie 4.41 (diff)
- 9:51 AM Changeset [6936] by
- Tagging Reggie 4.41
- 9:50 AM Changeset [6935] by
- Preparing to release Reggie 4.41
- 9:48 AM Ticket #1420 (Updates to registration of specimen handled by external lab) closed by
- fixed
- 9:43 AM Ticket #1419 (Methylation beta-analysis wizard) closed by
- fixed
- 9:43 AM Ticket #1418 (Implement support for methylation data) closed by
- fixed
- 9:42 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) closed by
- fixed
- 9:33 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by
- In 6934: […]
- 9:33 AM Changeset [6934] by
- References #1422: Add default configuration options for the new Slurm …
- 9:08 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by
- In 6933: […]
- 9:08 AM Changeset [6933] by
- References #1422: Add default configuration options for the new Slurm …
- 8:37 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by
- In 6932: […]
- 8:37 AM Changeset [6932] by
- References #1422: Add default configuration options for the new Slurm …
- 8:33 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by
- In 6931: […]
- 8:33 AM Changeset [6931] by
- References #1422: Add default configuration options for the new Slurm …
- 7:47 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by
- In 6930: […]
- 7:47 AM Changeset [6930] by
- References #1422: Add default configuration options for the new Slurm …
- 7:31 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) created by
- This should be usable now and we should enable it in Reggie so that we …
Dec 2, 2022:
- 2:24 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6929: […]
- 2:24 PM Changeset [6929] by
- References #1420: Updates to registration of specimen handled by …
- 1:48 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6928: […]
- 1:48 PM Changeset [6928] by
- References #1420: Updates to registration of specimen handled by …
- 1:46 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6927: […]
- 1:46 PM Changeset [6927] by
- References #1420: Updates to registration of specimen handled by …
- 1:44 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6926: […]
- 1:44 PM Changeset [6926] by
- References #1420: Updates to registration of specimen handled by …
- 12:57 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6925: […]
- 12:57 PM Changeset [6925] by
- References #1420: Updates to registration of specimen handled by …
- 12:02 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6924: […]
- 12:02 PM Changeset [6924] by
- References #1420: Updates to registration of specimen handled by …
- 9:35 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6923: […]
- 9:35 AM Changeset [6923] by
- References #1420: Updates to registration of specimen handled by …
- 9:06 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6922: […]
- 9:06 AM Changeset [6922] by
- References #1420: Updates to registration of specimen handled by …
- 8:44 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6921: […]
- 8:44 AM Changeset [6921] by
- References #1420: Updates to registration of specimen handled by …
Dec 1, 2022:
- 3:48 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6920: […]
- 3:48 PM Changeset [6920] by
- References #1420: Updates to registration of specimen handled by …
- 2:48 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6919: […]
- 2:47 PM Changeset [6919] by
- References #1420: Updates to registration of specimen handled by …
- 2:32 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6918: […]
- 2:32 PM Changeset [6918] by
- References #1420: Updates to registration of specimen handled by …
- 1:16 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6917: […]
- 1:16 PM Changeset [6917] by
- References #1420: Updates to registration of specimen handled by …
- 9:53 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6916: […]
- 9:53 AM Changeset [6916] by
- References #1420: Updates to registration of specimen handled by …
- 9:51 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6915: […]
- 9:51 AM Changeset [6915] by
- References #1420: Updates to registration of specimen handled by …
- 7:53 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6914: […]
- 7:53 AM Changeset [6914] by
- References #1420: Updates to registration of specimen handled by …
Nov 30, 2022:
- 2:42 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6913: […]
- 2:42 PM Changeset [6913] by
- References #1420: Updates to registration of specimen handled by …
- 2:09 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6912: […]
- 2:09 PM Changeset [6912] by
- References #1420: Updates to registration of specimen handled by …
- 2:08 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6911: […]
- 2:08 PM Changeset [6911] by
- References #1420: Updates to registration of specimen handled by …
- 9:43 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6910: […]
- 9:43 AM Changeset [6910] by
- References #1420: Updates to registration of specimen handled by …
- 9:42 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6909: […]
- 9:42 AM Changeset [6909] by
- References #1420: Updates to registration of specimen handled by …
- 9:12 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6908: […]
- 9:12 AM Changeset [6908] by
- References #1420: Updates to registration of specimen handled by …
- 9:11 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6907: […]
- 9:11 AM Changeset [6907] by
- References #1420: Updates to registration of specimen handled by …
- 8:55 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6906: […]
- 8:55 AM Changeset [6906] by
- References #1420: Updates to registration of specimen handled by …
- 8:35 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6905: […]
- 8:35 AM Changeset [6905] by
- References #1420: Updates to registration of specimen handled by …
Nov 29, 2022:
- 3:35 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6904: […]
- 3:35 PM Changeset [6904] by
- References #1420: Updates to registration of specimen handled by …
- 2:24 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6903: […]
- 2:24 PM Changeset [6903] by
- References #1420: Updates to registration of specimen handled by …
- 2:17 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6902: […]
- 2:17 PM Changeset [6902] by
- References #1420: Updates to registration of specimen handled by …
- 2:02 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6901: […]
- 2:02 PM Changeset [6901] by
- References #1420: Updates to registration of specimen handled by …
- 1:10 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6900: […]
- 1:10 PM Changeset [6900] by
- References #1420: Updates to registration of specimen handled by …
- 11:12 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6899: […]
- 11:12 AM Changeset [6899] by
- References #1420: Updates to registration of specimen handled by …
- 10:17 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6898: […]
- 10:17 AM Changeset [6898] by
- References #1420: Updates to registration of specimen handled by …
- 9:48 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6897: […]
- 9:48 AM Changeset [6897] by
- References #1420: Updates to registration of specimen handled by …
Nov 28, 2022:
- 3:24 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6896: […]
- 3:24 PM Changeset [6896] by
- References #1420: Updates to registration of specimen handled by …
Nov 25, 2022:
- 3:59 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6895: […]
- 3:59 PM Changeset [6895] by
- References #1420: Updates to registration of specimen handled by …
- 1:55 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6894: […]
- 1:55 PM Changeset [6894] by
- References #1420: Updates to registration of specimen handled by …
- 9:25 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6893: […]
- 9:25 AM Changeset [6893] by
- References #1420: Updates to registration of specimen handled by …
Nov 24, 2022:
- 1:48 PM Milestone Reggie v4.40.2 completed
- Bug fixes and enhancements for Reggie 4.40.1. Revision Log: …
- 1:48 PM net.sf.basedb.reggie edited by
- Released Reggie 4.40.2 (diff)
- 1:46 PM Changeset [6892] by
- Merge Reggie 4.40.2 to the trunk.
- 1:01 PM Changeset [6891] by
- Tagging Reggie 4.40.2
- 1:01 PM Changeset [6890] by
- Preparing to release Reggie 4.40.2
- 12:59 PM Ticket #1421 (NullPointerException in extraction registration wizard) closed by
- fixed: In 6889: […]
- 12:59 PM Changeset [6889] by
- Fixes #1421: NullPointerException in extraction registration wizard …
- 12:46 PM Ticket #1421 (NullPointerException in extraction registration wizard) created by
- This happened in the second step: […] The log file contains a …
- 9:24 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6888: […]
- 9:24 AM Changeset [6888] by
- References #1420: Updates to registration of specimen handled by …
- 9:17 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by
- In 6887: […]
- 9:17 AM Changeset [6887] by
- References #1420: Updates to registration of specimen handled by …
- 9:07 AM Ticket #1420 (Updates to registration of specimen handled by external lab) created by
- See #1349, #1347 and #1295 for background information about earlier …
- 8:38 AM Ticket #1419 (Methylation beta-analysis wizard) updated by
- In 6886: […]
- 8:38 AM Changeset [6886] by
- References #1419: Methylation beta-analysis wizard Adding a reference …
- 8:35 AM Ticket #1419 (Methylation beta-analysis wizard) updated by
- In 6885: […]
- 8:35 AM Changeset [6885] by
- References #1419: Methylation beta-analysis wizard Modified help text …
- 7:57 AM Ticket #1419 (Methylation beta-analysis wizard) updated by
- In 6884: […]
- 7:57 AM Changeset [6884] by
- References #1419: Methylation beta-analysis wizard Since the run time …
Nov 23, 2022:
- 1:37 PM Ticket #1419 (Methylation beta-analysis wizard) updated by
- In 6883: […]
- 1:37 PM Changeset [6883] by
- References #1419: Methylation beta-analysis wizard Fixed …
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