Timeline



Dec 5, 2022:

2:53 PM Changeset [6938] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.41
2:51 PM Ticket #1423 (NullPointerException when starting Methylation beta-analysis) updated by Nicklas Nordborg
Milestone changed
Milestone renamed
2:51 PM Ticket #1423 (NullPointerException when starting Methylation beta-analysis) created by Nicklas Nordborg
Selecting items, and job options works, but the final registration …
9:57 AM Changeset [6937] by Nicklas Nordborg
Changes for future relase Reggie 4.42
9:55 AM Milestone Reggie v4.41 completed
See Reggie extension page for more information.
9:54 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.41 (diff)
9:54 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.41 (diff)
9:52 AM reggie-4.41.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.41
9:51 AM Changeset [6936] by Nicklas Nordborg
Tagging Reggie 4.41
9:50 AM Changeset [6935] by Nicklas Nordborg
Preparing to release Reggie 4.41
9:48 AM Ticket #1420 (Updates to registration of specimen handled by external lab) closed by Nicklas Nordborg
fixed
9:43 AM Ticket #1419 (Methylation beta-analysis wizard) closed by Nicklas Nordborg
fixed
9:43 AM Ticket #1418 (Implement support for methylation data) closed by Nicklas Nordborg
fixed
9:42 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) closed by Nicklas Nordborg
fixed
9:33 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by Nicklas Nordborg
In 6934: […]
9:33 AM Changeset [6934] by Nicklas Nordborg
References #1422: Add default configuration options for the new Slurm …
9:08 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by Nicklas Nordborg
In 6933: […]
9:08 AM Changeset [6933] by Nicklas Nordborg
References #1422: Add default configuration options for the new Slurm …
8:37 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by Nicklas Nordborg
In 6932: […]
8:37 AM Changeset [6932] by Nicklas Nordborg
References #1422: Add default configuration options for the new Slurm …
8:33 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by Nicklas Nordborg
In 6931: […]
8:33 AM Changeset [6931] by Nicklas Nordborg
References #1422: Add default configuration options for the new Slurm …
7:47 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) updated by Nicklas Nordborg
In 6930: […]
7:47 AM Changeset [6930] by Nicklas Nordborg
References #1422: Add default configuration options for the new Slurm …
7:31 AM Ticket #1422 (Add default configuration options for the new Slurm cluster) created by Nicklas Nordborg
This should be usable now and we should enable it in Reggie so that we …

Dec 2, 2022:

2:24 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6929: […]
2:24 PM Changeset [6929] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
1:48 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6928: […]
1:48 PM Changeset [6928] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
1:46 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6927: […]
1:46 PM Changeset [6927] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
1:44 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6926: […]
1:44 PM Changeset [6926] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
12:57 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6925: […]
12:57 PM Changeset [6925] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
12:02 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6924: […]
12:02 PM Changeset [6924] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:35 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6923: […]
9:35 AM Changeset [6923] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:06 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6922: […]
9:06 AM Changeset [6922] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
8:44 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6921: […]
8:44 AM Changeset [6921] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …

Dec 1, 2022:

3:48 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6920: […]
3:48 PM Changeset [6920] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
2:48 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6919: […]
2:47 PM Changeset [6919] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
2:32 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6918: […]
2:32 PM Changeset [6918] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
1:16 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6917: […]
1:16 PM Changeset [6917] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:53 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6916: […]
9:53 AM Changeset [6916] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:51 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6915: […]
9:51 AM Changeset [6915] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
7:53 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6914: […]
7:53 AM Changeset [6914] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …

Nov 30, 2022:

2:42 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6913: […]
2:42 PM Changeset [6913] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
2:09 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6912: […]
2:09 PM Changeset [6912] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
2:08 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6911: […]
2:08 PM Changeset [6911] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:43 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6910: […]
9:43 AM Changeset [6910] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:42 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6909: […]
9:42 AM Changeset [6909] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:12 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6908: […]
9:12 AM Changeset [6908] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:11 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6907: […]
9:11 AM Changeset [6907] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
8:55 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6906: […]
8:55 AM Changeset [6906] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
8:35 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6905: […]
8:35 AM Changeset [6905] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …

Nov 29, 2022:

3:35 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6904: […]
3:35 PM Changeset [6904] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
2:24 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6903: […]
2:24 PM Changeset [6903] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
2:17 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6902: […]
2:17 PM Changeset [6902] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
2:02 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6901: […]
2:02 PM Changeset [6901] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
1:10 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6900: […]
1:10 PM Changeset [6900] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
11:12 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6899: […]
11:12 AM Changeset [6899] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
10:17 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6898: […]
10:17 AM Changeset [6898] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:48 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6897: […]
9:48 AM Changeset [6897] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …

Nov 28, 2022:

3:24 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6896: […]
3:24 PM Changeset [6896] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …

Nov 25, 2022:

3:59 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6895: […]
3:59 PM Changeset [6895] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
1:55 PM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6894: […]
1:55 PM Changeset [6894] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:25 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6893: […]
9:25 AM Changeset [6893] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …

Nov 24, 2022:

1:48 PM Milestone Reggie v4.40.2 completed
Bug fixes and enhancements for Reggie 4.40.1. Revision Log: …
1:48 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.40.2 (diff)
1:47 PM reggie-4.40.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.40.2
1:46 PM Changeset [6892] by Nicklas Nordborg
Merge Reggie 4.40.2 to the trunk.
1:01 PM Changeset [6891] by Nicklas Nordborg
Tagging Reggie 4.40.2
1:01 PM Changeset [6890] by Nicklas Nordborg
Preparing to release Reggie 4.40.2
12:59 PM Ticket #1421 (NullPointerException in extraction registration wizard) closed by Nicklas Nordborg
fixed: In 6889: […]
12:59 PM Changeset [6889] by Nicklas Nordborg
Fixes #1421: NullPointerException in extraction registration wizard …
12:46 PM Ticket #1421 (NullPointerException in extraction registration wizard) created by Nicklas Nordborg
This happened in the second step: […] The log file contains a …
9:24 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6888: […]
9:24 AM Changeset [6888] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:17 AM Ticket #1420 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6887: […]
9:17 AM Changeset [6887] by Nicklas Nordborg
References #1420: Updates to registration of specimen handled by …
9:07 AM Ticket #1420 (Updates to registration of specimen handled by external lab) created by Nicklas Nordborg
See #1349, #1347 and #1295 for background information about earlier …
8:38 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6886: […]
8:38 AM Changeset [6886] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Adding a reference …
8:35 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6885: […]
8:35 AM Changeset [6885] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Modified help text …
7:57 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6884: […]
7:57 AM Changeset [6884] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Since the run time …

Nov 23, 2022:

1:37 PM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6883: […]
1:37 PM Changeset [6883] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Fixed …

Nov 22, 2022:

3:55 PM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6882: […]
3:55 PM Changeset [6882] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added methylation …
1:47 PM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6881: […]
1:47 PM Changeset [6881] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Implemented …
11:32 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6880: […]
11:32 AM Changeset [6880] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Implemented …
8:51 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6879: […]
8:51 AM Changeset [6879] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Started with the …

Nov 18, 2022:

2:17 PM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6878: […]
2:17 PM Changeset [6878] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added a flag …
11:19 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6877: […]
11:19 AM Changeset [6877] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added thumbnails …
11:00 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6876: […]
11:00 AM Changeset [6876] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added a lot of …
8:47 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6875: […]
8:47 AM Changeset [6875] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Updated the R …

Nov 17, 2022:

9:46 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6874: […]
9:46 AM Changeset [6874] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard The R script now …
8:51 AM Changeset [6873] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added the R script …

Nov 16, 2022:

2:11 PM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6872: […]
2:11 PM Changeset [6872] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added a conteiner …
1:44 PM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6871: […]
1:44 PM Changeset [6871] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added a simple …
8:18 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6870: […]
8:18 AM Changeset [6870] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added a job …

Nov 15, 2022:

1:00 PM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6869: […]
1:00 PM Changeset [6869] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added a wizard for …
8:49 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6868: […]
8:49 AM Changeset [6868] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added an item list …
8:47 AM Ticket #1419 (Methylation beta-analysis wizard) updated by Nicklas Nordborg
In 6867: […]
8:47 AM Changeset [6867] by Nicklas Nordborg
References #1419: Methylation beta-analysis wizard Added a new …

Nov 14, 2022:

1:57 PM Ticket #1418 (Implement support for methylation data) updated by Nicklas Nordborg
Description changed
1:56 PM Ticket #1419 (Methylation beta-analysis wizard) created by Nicklas Nordborg
Implement a wizard that calculate beta-values for methylation …
7:31 AM Ticket #1418 (Implement support for methylation data) updated by Nicklas Nordborg
In 6866: […]
7:31 AM Changeset [6866] by Nicklas Nordborg
References #1418: Implement support for methylation data Added IDAT

Nov 9, 2022:

7:50 AM Ticket #1418 (Implement support for methylation data) updated by Nicklas Nordborg
Description changed
7:46 AM Ticket #1418 (Implement support for methylation data) updated by Nicklas Nordborg
In 6865: […]
7:46 AM Changeset [6865] by Nicklas Nordborg
References #1418: Implement support for methylation data Added …
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