Timeline



Apr 6, 2022:

10:00 AM Changeset [6669] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:52 AM Changeset [6668] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …

Apr 5, 2022:

9:41 AM Changeset [6667] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
9:36 AM Changeset [6666] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
9:33 AM Changeset [6665] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:00 AM Ticket #1381 (Manually confirming a variant call analysis doesn't add the raw ...) closed by Nicklas Nordborg
fixed: In 6664: […]
9:00 AM Changeset [6664] by Nicklas Nordborg
Fixes #1381: Manually confirming a variant call analysis doesn't add …
8:57 AM Ticket #1381 (Manually confirming a variant call analysis doesn't add the raw ...) created by Nicklas Nordborg
The next step after variant calling is to do targeted genotyping. This …

Apr 1, 2022:

3:34 PM Changeset [6663] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
11:50 AM Changeset [6662] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:58 AM Changeset [6661] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:47 AM Changeset [6660] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
10:29 AM Changeset [6659] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …

Mar 31, 2022:

7:26 AM Changeset [6658] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 30, 2022:

8:27 AM Changeset [6657] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 29, 2022:

8:50 AM Changeset [6656] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 24, 2022:

11:46 AM Changeset [6655] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 23, 2022:

1:15 PM Changeset [6654] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
8:34 AM Changeset [6653] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 22, 2022:

12:48 PM Milestone Reggie v4.37.4 completed
Bug fixes and enhancements for Reggie 4.37.3. Revision Log: …
12:47 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37.4 (diff)
12:47 PM reggie-4.37.4.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37.4
12:45 PM Changeset [6652] by Nicklas Nordborg
Tagging Reggie 4.37.4
12:45 PM Changeset [6651] by Nicklas Nordborg
Preparing to relase Reggie 4.37.4
8:49 AM Ticket #1380 (The prepDE step in the StringTie analysis generate files with ...) closed by Nicklas Nordborg
fixed: In 6650: […]
8:49 AM Changeset [6650] by Nicklas Nordborg
Fixes #1380: The prepDE step in the StringTie? analysis generate files …
8:49 AM Ticket #1380 (The prepDE step in the StringTie analysis generate files with ...) created by Nicklas Nordborg
See #1266 for the introduction of prepDE in the StringTie pipeline. …

Mar 21, 2022:

9:19 AM Changeset [6649] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:16 AM Changeset [6648] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
9:14 AM Changeset [6647] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …

Mar 17, 2022:

7:42 AM Changeset [6646] by Nicklas Nordborg
Merge Reggie 4.37.3 to the trunk.
7:36 AM Milestone Reggie v4.37.3 completed
Bug fixes and enhancements for Reggie 4.37.2. Revision Log: …
7:36 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37.3 (diff)
7:35 AM reggie-4.37.3.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37.3
7:33 AM Changeset [6645] by Nicklas Nordborg
Tagging Reggie 4.37.3
7:33 AM Changeset [6644] by Nicklas Nordborg
Preparing to release Reggie 4.37.3
7:30 AM Changeset [6643] by Nicklas Nordborg
References #1378: The "Pathology referral form wizard" may register a …

Mar 16, 2022:

1:11 PM Ticket #1379 (Register HE glass when one histology item is missing) closed by Nicklas Nordborg
fixed: In 6642: […]
1:11 PM Changeset [6642] by Nicklas Nordborg
Fixes #1379: Register HE glass when one histology item is missing It …
9:19 AM Ticket #1378 (The "Pathology referral form wizard" may register a second case ...) closed by Nicklas Nordborg
fixed: In 6641: […]
9:19 AM Changeset [6641] by Nicklas Nordborg
Fixes #1378: The "Pathology referral form wizard" may register a …
7:54 AM Ticket #1379 (Register HE glass when one histology item is missing) created by Nicklas Nordborg
Normally there are 5 histology items on a single paraffin block which …
7:49 AM Ticket #1378 (The "Pathology referral form wizard" may register a second case ...) created by Nicklas Nordborg
We recently discovered a registration where the "Pathology referral …

Mar 11, 2022:

1:33 PM Changeset [6640] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
1:29 PM Changeset [6639] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …

Mar 9, 2022:

10:39 AM Changeset [6638] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
8:49 AM Ticket #1376 (Selecting cluster in the secondary analysis wizards) closed by Nicklas Nordborg
fixed: In 6637: […]
8:49 AM Changeset [6637] by Nicklas Nordborg
Fixes #1376: Selecting cluster in the secondary analysis wizards All …
8:33 AM Ticket #1377 (The FASTQ import auto-confirmation doesn't start legacy jobs with ...) closed by Nicklas Nordborg
fixed: In 6636: […]
8:33 AM Changeset [6636] by Nicklas Nordborg
Fixes #1377: The FASTQ import auto-confirmation doesn't start legacy …
8:31 AM Ticket #1377 (The FASTQ import auto-confirmation doesn't start legacy jobs with ...) created by Nicklas Nordborg
See #1340. This seems to be implemented only in the regular demux …
8:28 AM Changeset [6635] by Nicklas Nordborg
References #1376: Selecting cluster in the secondary analysis wizards …

Mar 8, 2022:

2:49 PM Changeset [6634] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
1:12 PM Changeset [6633] by Nicklas Nordborg
References #1376: Selecting cluster in the secondary analysis wizards …
12:42 PM Changeset [6632] by Nicklas Nordborg
References #1376: Selecting cluster in the secondary analysis wizards …
11:31 AM Ticket #1376 (Selecting cluster in the secondary analysis wizards) created by Nicklas Nordborg
A new cluster is coming soon, and it will be based on Slurm and run …
9:36 AM Changeset [6631] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 7, 2022:

12:56 PM Changeset [6630] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
12:55 PM Changeset [6629] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
8:47 AM Changeset [6628] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
7:39 AM Changeset [6627] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
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