Timeline



Mar 21, 2022:

9:19 AM Changeset [6649] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:16 AM Changeset [6648] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
9:14 AM Changeset [6647] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …

Mar 17, 2022:

7:42 AM Changeset [6646] by Nicklas Nordborg
Merge Reggie 4.37.3 to the trunk.
7:36 AM Milestone Reggie v4.37.3 completed
Bug fixes and enhancements for Reggie 4.37.2. Revision Log: …
7:36 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37.3 (diff)
7:35 AM reggie-4.37.3.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37.3
7:33 AM Changeset [6645] by Nicklas Nordborg
Tagging Reggie 4.37.3
7:33 AM Changeset [6644] by Nicklas Nordborg
Preparing to release Reggie 4.37.3
7:30 AM Changeset [6643] by Nicklas Nordborg
References #1378: The "Pathology referral form wizard" may register a …

Mar 16, 2022:

1:11 PM Ticket #1379 (Register HE glass when one histology item is missing) closed by Nicklas Nordborg
fixed: In 6642: […]
1:11 PM Changeset [6642] by Nicklas Nordborg
Fixes #1379: Register HE glass when one histology item is missing It …
9:19 AM Ticket #1378 (The "Pathology referral form wizard" may register a second case ...) closed by Nicklas Nordborg
fixed: In 6641: […]
9:19 AM Changeset [6641] by Nicklas Nordborg
Fixes #1378: The "Pathology referral form wizard" may register a …
7:54 AM Ticket #1379 (Register HE glass when one histology item is missing) created by Nicklas Nordborg
Normally there are 5 histology items on a single paraffin block which …
7:49 AM Ticket #1378 (The "Pathology referral form wizard" may register a second case ...) created by Nicklas Nordborg
We recently discovered a registration where the "Pathology referral …

Mar 11, 2022:

1:33 PM Changeset [6640] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
1:29 PM Changeset [6639] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …

Mar 9, 2022:

10:39 AM Changeset [6638] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
8:49 AM Ticket #1376 (Selecting cluster in the secondary analysis wizards) closed by Nicklas Nordborg
fixed: In 6637: […]
8:49 AM Changeset [6637] by Nicklas Nordborg
Fixes #1376: Selecting cluster in the secondary analysis wizards All …
8:33 AM Ticket #1377 (The FASTQ import auto-confirmation doesn't start legacy jobs with ...) closed by Nicklas Nordborg
fixed: In 6636: […]
8:33 AM Changeset [6636] by Nicklas Nordborg
Fixes #1377: The FASTQ import auto-confirmation doesn't start legacy …
8:31 AM Ticket #1377 (The FASTQ import auto-confirmation doesn't start legacy jobs with ...) created by Nicklas Nordborg
See #1340. This seems to be implemented only in the regular demux …
8:28 AM Changeset [6635] by Nicklas Nordborg
References #1376: Selecting cluster in the secondary analysis wizards …

Mar 8, 2022:

2:49 PM Changeset [6634] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
1:12 PM Changeset [6633] by Nicklas Nordborg
References #1376: Selecting cluster in the secondary analysis wizards …
12:42 PM Changeset [6632] by Nicklas Nordborg
References #1376: Selecting cluster in the secondary analysis wizards …
11:31 AM Ticket #1376 (Selecting cluster in the secondary analysis wizards) created by Nicklas Nordborg
A new cluster is coming soon, and it will be based on Slurm and run …
9:36 AM Changeset [6631] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 7, 2022:

12:56 PM Changeset [6630] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
12:55 PM Changeset [6629] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
8:47 AM Changeset [6628] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
7:39 AM Changeset [6627] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …

Mar 4, 2022:

1:34 PM Changeset [6626] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
1:13 PM Changeset [6625] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
12:55 PM Changeset [6624] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
12:50 PM Changeset [6623] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
12:04 PM Ticket #1375 (Changes that are needed or useful for running jobs inside a container) created by Nicklas Nordborg
I expect that we want to add some functionality and change some things …
11:57 AM Changeset [6622] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
8:45 AM Ticket #1374 (Implement support for running jobs in a Singularity container) created by Nicklas Nordborg
In a Singularity container we can install all programs that are needed …

Mar 3, 2022:

7:35 AM Milestone Reggie v4.37.2 completed
Bug fixes and enhancements for Reggie 4.37.1. Revision Log: …
7:35 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37.2 (diff)
7:33 AM reggie-4.37.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37.2
7:32 AM Changeset [6621] by Nicklas Nordborg
Tagging Reggie 4.37.2
7:32 AM Changeset [6620] by Nicklas Nordborg
Preparing to release Reggie 4.37.2
7:30 AM Ticket #1372 (New pattern for RCC-id used for follow-up blood samples) closed by Nicklas Nordborg
fixed

Mar 2, 2022:

2:59 PM Changeset [6619] by Nicklas Nordborg
References #1372: New pattern for RCC-id used for follow-up blood …
2:18 PM Ticket #1373 (Display how a match was found in case summary) closed by Nicklas Nordborg
fixed: In 6618: […]
2:18 PM Changeset [6618] by Nicklas Nordborg
Fixes #1373: Display how a match was found in case summary
2:03 PM Ticket #1373 (Display how a match was found in case summary) created by Nicklas Nordborg
The typical way to find a case to display in the case summary is to …
1:34 PM Changeset [6617] by Nicklas Nordborg
References #1372: New pattern for RCC-id used for follow-up blood …
1:26 PM Changeset [6616] by Nicklas Nordborg
References #1372: New pattern for RCC-id used for follow-up blood …
8:35 AM Ticket #1372 (New pattern for RCC-id used for follow-up blood samples) created by Nicklas Nordborg
The pattern for RCC-id values are changed to be something like …

Mar 1, 2022:

8:33 AM Changeset [6615] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …

Feb 28, 2022:

1:25 PM Changeset [6614] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …
9:18 AM Changeset [6613] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …
8:57 AM Ticket #1371 (Update to SSHj 0.32) closed by Nicklas Nordborg
fixed: In 6612: […]
8:57 AM Changeset [6612] by Nicklas Nordborg
Fixes #1371: Update to SSHj 0.32
8:48 AM Ticket #1371 (Update to SSHj 0.32) created by Nicklas Nordborg
8:45 AM Ticket #1370 (Switch to BASE 3.19) closed by Nicklas Nordborg
fixed: In 6611: […]
8:45 AM Changeset [6611] by Nicklas Nordborg
Fixes #1370: Switch to BASE 3.19
8:43 AM Ticket #1370 (Switch to BASE 3.19) created by Nicklas Nordborg
8:39 AM Ticket #1369 (Implement support for starting jobs without a queue system) created by Nicklas Nordborg
This would be a feature to make it easier for developers to implement …

Feb 25, 2022:

7:45 AM Changeset [6610] by Nicklas Nordborg
Merged Reggie 4.37.1 to the trunk
7:38 AM Milestone Reggie v4.37.1 completed
Bug fixes and enhancements for Reggie 4.37. Revision Log: …
7:36 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37.1 (diff)
7:35 AM reggie-4.37.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37.1
7:34 AM Changeset [6609] by Nicklas Nordborg
Tagging Reggie 4.37.1
7:34 AM Changeset [6608] by Nicklas Nordborg
Preparing to release Reggie 4.37.1

Feb 24, 2022:

7:59 AM Ticket #1368 (The "Plasma/Serum" checkbox in the blood registration wizard should ...) closed by Nicklas Nordborg
fixed: In 6607: […]
7:59 AM Changeset [6607] by Nicklas Nordborg
Fixes #1368: The "Plasma/Serum?" checkbox in the blood registration …
7:39 AM Changeset [6606] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.37
7:20 AM Ticket #1368 (The "Plasma/Serum" checkbox in the blood registration wizard should ...) created by Nicklas Nordborg

Feb 23, 2022:

8:35 AM Ticket #1366 (If there are no variants in an index, it should not be possible to ...) closed by Nicklas Nordborg
fixed: In 6605: […]
8:35 AM Changeset [6605] by Nicklas Nordborg
Fixes #1366: If there are no variants in an index, it should not be …
7:41 AM Changeset [6604] by Nicklas Nordborg
References #1364: Update to BASE 3.19 Added named transacations.

Feb 22, 2022:

2:16 PM Changeset [6603] by Nicklas Nordborg
References #1364: Update to BASE 3.19 Changed in the build.xml file.
12:55 PM Changeset [6602] by Nicklas Nordborg
Changes for future release Reggie 4.38
12:53 PM Milestone Reggie v4.37 completed
See Reggie extension page for more information.
12:53 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.37 (diff)
12:52 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37 (diff)
12:51 PM reggie-4.37.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37
12:50 PM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) closed by Nicklas Nordborg
fixed
12:49 PM Changeset [6601] by Nicklas Nordborg
Tagging Reggie 4.37
12:48 PM Changeset [6600] by Nicklas Nordborg
Preparing to release Reggie 4.37
12:46 PM Ticket #1367 (Named transactions initiated by Reggie services) closed by Nicklas Nordborg
fixed: In 6599: […]
12:46 PM Changeset [6599] by Nicklas Nordborg
Fixes #1367: Named transactions initiated by Reggie services
12:03 PM Ticket #1367 (Named transactions initiated by Reggie services) created by Nicklas Nordborg
Typically when a transaction is initiated by Reggie the name is …
9:38 AM Ticket #1366 (If there are no variants in an index, it should not be possible to ...) created by Nicklas Nordborg
9:37 AM Ticket #1365 (Update to Lucene 9) created by Nicklas Nordborg
9:37 AM Ticket #1364 (Update to BASE 3.19) created by Nicklas Nordborg
9:25 AM Changeset [6598] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards The …
8:48 AM Ticket #1363 (Allow gzip compressed VCF files to be used in the genotype wizards) closed by Nicklas Nordborg
fixed: In 6597: […]
8:48 AM Changeset [6597] by Nicklas Nordborg
Fixes #1363: Allow gzip compressed VCF files to be used in the …
8:43 AM Ticket #1363 (Allow gzip compressed VCF files to be used in the genotype wizards) created by Nicklas Nordborg
It should be simple to implement by just wrapping the InputStream …
8:39 AM Changeset [6596] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards Found …
8:39 AM Changeset [6595] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …

Feb 21, 2022:

2:33 PM Changeset [6594] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
1:16 PM Ticket #1362 (Add a counter to the table in the Import externally processed samples ...) closed by Nicklas Nordborg
fixed: In 6593: […]
1:16 PM Changeset [6593] by Nicklas Nordborg
Fixes #1362: Add a counter to the table in the Import externally …
1:02 PM Ticket #1362 (Add a counter to the table in the Import externally processed samples ...) created by Nicklas Nordborg
1:01 PM Changeset [6592] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
1:01 PM Changeset [6591] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
9:29 AM Changeset [6590] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
8:52 AM Changeset [6589] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards The …
Note: See TracTimeline for information about the timeline view.