Timeline



Mar 1, 2022:

8:33 AM Ticket #1369 (Implement support for starting jobs without a queue system) updated by Nicklas Nordborg
In 6615: […]
8:33 AM Changeset [6615] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …

Feb 28, 2022:

1:25 PM Ticket #1369 (Implement support for starting jobs without a queue system) updated by Nicklas Nordborg
In 6614: […]
1:25 PM Changeset [6614] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …
9:18 AM Ticket #1369 (Implement support for starting jobs without a queue system) updated by Nicklas Nordborg
In 6613: […]
9:18 AM Changeset [6613] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …
8:57 AM Ticket #1371 (Update to SSHj 0.32) closed by Nicklas Nordborg
fixed: In 6612: […]
8:57 AM Changeset [6612] by Nicklas Nordborg
Fixes #1371: Update to SSHj 0.32
8:48 AM Ticket #1371 (Update to SSHj 0.32) created by Nicklas Nordborg
8:45 AM Ticket #1370 (Switch to BASE 3.19) closed by Nicklas Nordborg
fixed: In 6611: […]
8:45 AM Changeset [6611] by Nicklas Nordborg
Fixes #1370: Switch to BASE 3.19
8:43 AM Ticket #1370 (Switch to BASE 3.19) created by Nicklas Nordborg
8:39 AM Ticket #1369 (Implement support for starting jobs without a queue system) created by Nicklas Nordborg
This would be a feature to make it easier for developers to implement …

Feb 25, 2022:

7:45 AM Changeset [6610] by Nicklas Nordborg
Merged Reggie 4.37.1 to the trunk
7:38 AM Milestone Reggie v4.37.1 completed
Bug fixes and enhancements for Reggie 4.37. Revision Log: …
7:36 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37.1 (diff)
7:35 AM reggie-4.37.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37.1
7:34 AM Changeset [6609] by Nicklas Nordborg
Tagging Reggie 4.37.1
7:34 AM Changeset [6608] by Nicklas Nordborg
Preparing to release Reggie 4.37.1

Feb 24, 2022:

7:59 AM Ticket #1368 (The "Plasma/Serum" checkbox in the blood registration wizard should ...) closed by Nicklas Nordborg
fixed: In 6607: […]
7:59 AM Changeset [6607] by Nicklas Nordborg
Fixes #1368: The "Plasma/Serum" checkbox in the blood registration …
7:39 AM Changeset [6606] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.37
7:21 AM Ticket #1368 (The "Plasma/Serum" checkbox in the blood registration wizard should ...) updated by Nicklas Nordborg
Milestone changed
Milestone renamed
7:20 AM Ticket #1368 (The "Plasma/Serum" checkbox in the blood registration wizard should ...) created by Nicklas Nordborg

Feb 23, 2022:

8:35 AM Ticket #1366 (If there are no variants in an index, it should not be possible to ...) closed by Nicklas Nordborg
fixed: In 6605: […]
8:35 AM Changeset [6605] by Nicklas Nordborg
Fixes #1366: If there are no variants in an index, it should not be …
8:33 AM Ticket #1366 (If there are no variants in an index, it should not be possible to ...) updated by Nicklas Nordborg
Summary changed
7:41 AM Ticket #1364 (Update to BASE 3.19) updated by Nicklas Nordborg
In 6604: […]
7:41 AM Changeset [6604] by Nicklas Nordborg
References #1364: Update to BASE 3.19 Added named transacations.

Feb 22, 2022:

2:16 PM Ticket #1364 (Update to BASE 3.19) updated by Nicklas Nordborg
In 6603: […]
2:16 PM Changeset [6603] by Nicklas Nordborg
References #1364: Update to BASE 3.19 Changed in the build.xml file.
12:55 PM Changeset [6602] by Nicklas Nordborg
Changes for future release Reggie 4.38
12:53 PM Milestone Reggie v4.37 completed
See Reggie extension page for more information.
12:53 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.37 (diff)
12:52 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37 (diff)
12:51 PM reggie-4.37.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37
12:50 PM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) closed by Nicklas Nordborg
fixed
12:49 PM Changeset [6601] by Nicklas Nordborg
Tagging Reggie 4.37
12:48 PM Changeset [6600] by Nicklas Nordborg
Preparing to release Reggie 4.37
12:46 PM Ticket #1367 (Named transactions initiated by Reggie services) closed by Nicklas Nordborg
fixed: In 6599: […]
12:46 PM Changeset [6599] by Nicklas Nordborg
Fixes #1367: Named transactions initiated by Reggie services
12:03 PM Ticket #1367 (Named transactions initiated by Reggie services) created by Nicklas Nordborg
Typically when a transaction is initiated by Reggie the name is …
9:38 AM Ticket #1366 (If there are no variants in an index, it should not be possible to ...) created by Nicklas Nordborg
9:37 AM Ticket #1365 (Update to Lucene 9) created by Nicklas Nordborg
9:37 AM Ticket #1364 (Update to BASE 3.19) created by Nicklas Nordborg
9:25 AM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6598: […]
9:25 AM Changeset [6598] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards The …
8:48 AM Ticket #1363 (Allow gzip compressed VCF files to be used in the genotype wizards) closed by Nicklas Nordborg
fixed: In 6597: […]
8:48 AM Changeset [6597] by Nicklas Nordborg
Fixes #1363: Allow gzip compressed VCF files to be used in the …
8:43 AM Ticket #1363 (Allow gzip compressed VCF files to be used in the genotype wizards) created by Nicklas Nordborg
It should be simple to implement by just wrapping the InputStream …
8:39 AM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6596: […]
8:39 AM Changeset [6596] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards Found …
8:39 AM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6595: […]
8:39 AM Changeset [6595] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …

Feb 21, 2022:

2:33 PM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6594: […]
2:33 PM Changeset [6594] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
1:16 PM Ticket #1362 (Add a counter to the table in the Import externally processed samples ...) closed by Nicklas Nordborg
fixed: In 6593: […]
1:16 PM Changeset [6593] by Nicklas Nordborg
Fixes #1362: Add a counter to the table in the Import externally …
1:02 PM Ticket #1362 (Add a counter to the table in the Import externally processed samples ...) created by Nicklas Nordborg
1:01 PM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6592: […]
1:01 PM Changeset [6592] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
1:01 PM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6591: […]
1:01 PM Changeset [6591] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
9:29 AM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6590: […]
9:29 AM Changeset [6590] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards …
8:52 AM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6589: […]
8:52 AM Changeset [6589] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards The …

Feb 18, 2022:

10:39 AM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) updated by Nicklas Nordborg
In 6588: […]
10:39 AM Changeset [6588] by Nicklas Nordborg
References #1361: Use DNA genotyping in the Genotype QC wizards The …

Feb 17, 2022:

12:53 PM Ticket #1361 (Use DNA genotyping in the Genotype QC wizards) created by Nicklas Nordborg
Now that the genotyping information from the blood DNA samples have …

Feb 14, 2022:

7:56 AM Changeset [6587] by Nicklas Nordborg
Changes for future release Reggie 4.37
7:53 AM Milestone Reggie v4.36 completed
See Reggie extension page for more information.
7:53 AM Ticket #1360 (Updates to registration of specimen handled by external lab) closed by Nicklas Nordborg
fixed
7:53 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.36 (diff)
7:52 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.36 (diff)
7:50 AM reggie-4.36.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.36
7:47 AM Changeset [6586] by Nicklas Nordborg
Tagging Reggie 4.36
7:47 AM Changeset [6585] by Nicklas Nordborg
Preparing to release Reggie 4.36

Feb 11, 2022:

1:10 PM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6584: […]
1:10 PM Changeset [6584] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
1:09 PM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6583: […]
1:09 PM Changeset [6583] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
8:57 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6582: […]
8:57 AM Changeset [6582] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …

Feb 10, 2022:

1:41 PM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6581: […]
1:41 PM Changeset [6581] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
9:26 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6580: […]
9:26 AM Changeset [6580] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
8:50 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6579: […]
8:50 AM Changeset [6579] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …

Feb 9, 2022:

2:06 PM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6578: […]
2:06 PM Changeset [6578] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
9:15 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6577: […]
9:15 AM Changeset [6577] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
9:02 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6576: […]
9:02 AM Changeset [6576] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
8:45 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6575: […]
8:45 AM Changeset [6575] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …

Feb 8, 2022:

1:13 PM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6574: […]
1:13 PM Changeset [6574] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …

Feb 7, 2022:

9:32 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6573: […]
9:32 AM Changeset [6573] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …
9:11 AM Ticket #1360 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6572: […]
9:11 AM Changeset [6572] by Nicklas Nordborg
References #1360: Updates to registration of specimen handled by …

Feb 4, 2022:

1:47 PM Ticket #1360 (Updates to registration of specimen handled by external lab) created by Nicklas Nordborg
The registration of specimen handled by external lab has been …

Feb 2, 2022:

8:37 AM Changeset [6571] by Nicklas Nordborg
Changes for future release Variant search 1.6
8:36 AM Milestone Variant Search v1.5 completed
See Variant Search extension page for …
8:36 AM Ticket #1354 (Search functionality for the OncoArray-500K SNP chip) closed by Nicklas Nordborg
fixed
8:36 AM PluginDownload edited by Nicklas Nordborg
Released Variant Search 1.4 (diff)
8:35 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
Released Variant Search 1.5 (diff)
8:34 AM varsearch-1.5.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.5
8:32 AM Changeset [6570] by Nicklas Nordborg
Tagging Variant search 1.5
8:32 AM Changeset [6569] by Nicklas Nordborg
Preparing to release Variant search 1.5

Feb 1, 2022:

2:29 PM Changeset [6568] by Nicklas Nordborg
Changes for future release Reggie 4.36
2:28 PM Milestone Reggie v4.35 completed
See Reggie extension page for more information.
2:26 PM Milestone Reggie v4.34.1 completed
Bug fixes and enhancements for Reggie 4.34. Revision Log: …
2:26 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.35 (diff)
2:24 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.34.1 and Reggie 4.35 (diff)
2:21 PM reggie-4.35.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.35
2:21 PM reggie-4.34.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.34.1
2:18 PM Changeset [6567] by Nicklas Nordborg
Tagging Reggie 4.35
2:18 PM Changeset [6566] by Nicklas Nordborg
Preparing to release Reggie 4.35
2:17 PM Ticket #1353 (Search functionality for all genotypes on the OncoArray-500K) closed by Nicklas Nordborg
fixed
2:16 PM Changeset [6565] by Nicklas Nordborg
Merged Reggie 4.34.1 to the trunk
2:13 PM Changeset [6564] by Nicklas Nordborg
Tagging Reggie 4.34.1
2:13 PM Changeset [6563] by Nicklas Nordborg
Preparing to release Reggie 4.34.1
1:32 PM Ticket #1359 (Case summary doesn't find anything when there is a prefix in the SCANB ID) closed by Nicklas Nordborg
fixed: In 6562: […]
1:32 PM Changeset [6562] by Nicklas Nordborg
Fixes #1359: Case summary doesn't find anything when there is a prefix …
12:49 PM Ticket #1359 (Case summary doesn't find anything when there is a prefix in the SCANB ID) created by Nicklas Nordborg
A prefix was added to blood referral forms in #1310. The prefix is …
11:59 AM net.sf.basedb.varsearch/using edited by Nicklas Nordborg
Added note about limitations in the OncoArray index (diff)
11:29 AM Ticket #1358 (The project archive service is not aware of files related to blood items) closed by Nicklas Nordborg
fixed: In 6561: […]
11:29 AM Changeset [6561] by Nicklas Nordborg
Fixes #1358: The project archive service is not aware of files related …
9:55 AM Ticket #1354 (Search functionality for the OncoArray-500K SNP chip) updated by Nicklas Nordborg
In 6560: […]
9:55 AM Changeset [6560] by Nicklas Nordborg
References #1354: Search functionality for the OncoArray-500K SNP chip …
9:53 AM Ticket #1354 (Search functionality for the OncoArray-500K SNP chip) updated by Nicklas Nordborg
In 6559: […]
9:53 AM Changeset [6559] by Nicklas Nordborg
References #1354: Search functionality for the OncoArray-500K SNP chip …

Jan 31, 2022:

1:49 PM Ticket #1354 (Search functionality for the OncoArray-500K SNP chip) updated by Nicklas Nordborg
In 6558: […]
1:49 PM Changeset [6558] by Nicklas Nordborg
References #1354: Search functionality for the OncoArray-500K SNP chip …
10:59 AM Ticket #1353 (Search functionality for all genotypes on the OncoArray-500K) updated by Nicklas Nordborg
In 6557: […]
10:59 AM Changeset [6557] by Nicklas Nordborg
References #1353: Search functionality for all genotypes on the …
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