Timeline



Dec 21, 2021:

9:24 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
(diff)
9:12 AM net.sf.basedb.varsearch/using edited by Nicklas Nordborg
(diff)
8:44 AM net.sf.basedb.varsearch/install edited by Nicklas Nordborg
(diff)
7:45 AM Changeset [6535] by Nicklas Nordborg
Changes for future release Variant Search 1.5
7:43 AM Milestone Variant Search v1.4 completed
See Variant Search extension page for …
7:43 AM PluginDownload edited by Nicklas Nordborg
Released Variant Search 1.4 (diff)
7:42 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
Released Variant Search 1.4 (diff)
7:40 AM varsearch-1.4.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.4
7:39 AM Changeset [6534] by Nicklas Nordborg
Tagging Variant search 1.4
7:39 AM Changeset [6533] by Nicklas Nordborg
Reset debug flag.
7:38 AM Changeset [6532] by Nicklas Nordborg
Preparing to release Variant Search 1.4
7:38 AM Ticket #1355 (Implement dialog for listing variants for a single raw bioassay) closed by Nicklas Nordborg
fixed

Dec 20, 2021:

2:50 PM Changeset [6531] by Nicklas Nordborg
References #1357: Update link descriptions after indexing Update the …
2:49 PM Changeset [6530] by Nicklas Nordborg
References #1355: Implement dialog for listing variants for a single …
1:24 PM Ticket #1357 (Update link descriptions after indexing) closed by Nicklas Nordborg
fixed: In 6529: […]
1:23 PM Changeset [6529] by Nicklas Nordborg
Fixes #1357: Update link descriptions after indexing
1:23 PM Changeset [6528] by Nicklas Nordborg
1:02 PM Ticket #1357 (Update link descriptions after indexing) created by Nicklas Nordborg
It would be nice to have a description text in the VCF file links. …
11:07 AM Changeset [6527] by Nicklas Nordborg
References #1355: Implement dialog for listing variants for a single …
11:07 AM Changeset [6526] by Nicklas Nordborg
References #1355: Implement dialog for listing variants for a single …
8:34 AM Changeset [6525] by Nicklas Nordborg
References #1355: Implement dialog for listing variants for a single …
8:32 AM Ticket #1356 (Return results for all genotypes when the query include af, vd or dp fields) closed by Nicklas Nordborg
fixed: In 6524: […]
8:32 AM Changeset [6524] by Nicklas Nordborg
Fixes #1356: Return results for all genotypes when the query include …
8:22 AM Ticket #1356 (Return results for all genotypes when the query include af, vd or dp fields) created by Nicklas Nordborg
The targeted genotypes index include both variants (0/1, 1/1) and 0/0 …
7:35 AM Changeset [6523] by Nicklas Nordborg
References #1355: Implement dialog for listing variants for a single …
7:34 AM Changeset [6522] by Nicklas Nordborg
References #1355: Implement dialog for listing variants for a single …

Dec 17, 2021:

2:51 PM Ticket #1355 (Implement dialog for listing variants for a single raw bioassay) created by Nicklas Nordborg
When there is no query for variants, the columns for displaying …

Dec 14, 2021:

11:41 AM Changeset [6521] by Nicklas Nordborg
Adding a wrapper for calling Hisat 2.2. It requries extra entries in …

Dec 10, 2021:

11:56 AM Ticket #1354 (Search functionality for the OncoArray-500K SNP chip) created by Nicklas Nordborg
Reggie will add VCF files with genotype data for the OncoArray 500K …
11:45 AM Ticket #1353 (Search functionality for all genotypes on the OncoArray-500K) created by Nicklas Nordborg
The implementation that started in #1346 should be extended to make it …

Dec 9, 2021:

2:55 PM Ticket #1352 (The "Genotype summary" dialog incorrectly state that all items are ...) created by Nicklas Nordborg
This also happens for GenotypeCall items. It seems to be hard-coded …

Dec 8, 2021:

9:02 AM Changeset [6520] by Nicklas Nordborg
Changes for future release Reggie 4.35
9:00 AM Milestone Reggie v4.34 completed
See Reggie extension page for more information.
8:59 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.34 (diff)
8:59 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.34 (diff)
8:57 AM reggie-4.34.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.34
8:57 AM Tickets #1343,​1346 batch updated by Nicklas Nordborg
fixed
8:55 AM Changeset [6519] by Nicklas Nordborg
Tagging Reggie 4.34
8:55 AM Changeset [6518] by Nicklas Nordborg
Preparing to release Reggie 4.34

Dec 7, 2021:

2:50 PM Changeset [6517] by Nicklas Nordborg
References #1346: Implement support for OncoArray? SNP data Added …
1:29 PM Changeset [6516] by Nicklas Nordborg
References #1346: Implement support for OncoArray? SNP data Hide the …
1:28 PM Changeset [6515] by Nicklas Nordborg
References #1346: Implement support for OncoArray? SNP data Added the …
9:57 AM Changeset [6514] by Nicklas Nordborg
References #1346: Implement support for OncoArray? SNP data …
9:57 AM Changeset [6513] by Nicklas Nordborg
References #1346: Implement support for OncoArray? SNP data …

Dec 6, 2021:

2:28 PM Changeset [6512] by Nicklas Nordborg
References #1346: Implement support for OncoArray? SNP data Added …
9:52 AM Changeset [6511] by Nicklas Nordborg
References #1346: Implement support for OncoArray? SNP data Added …
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