Timeline



Dec 17, 2021:

2:51 PM Ticket #1355 (Implement dialog for listing variants for a single raw bioassay) created by Nicklas Nordborg
When there is no query for variants, the columns for displaying …

Dec 14, 2021:

11:41 AM Changeset [6521] by Nicklas Nordborg
Adding a wrapper for calling Hisat 2.2. It requries extra entries in …

Dec 10, 2021:

11:56 AM Ticket #1354 (Search functionality for the OncoArray-500K SNP chip) created by Nicklas Nordborg
Reggie will add VCF files with genotype data for the OncoArray 500K …
11:45 AM Ticket #1353 (Search functionality for all genotypes on the OncoArray-500K) created by Nicklas Nordborg
The implementation that started in #1346 should be extended to make it …

Dec 9, 2021:

2:55 PM Ticket #1352 (The "Genotype summary" dialog incorrectly state that all items are ...) created by Nicklas Nordborg
This also happens for GenotypeCall items. It seems to be hard-coded …

Dec 8, 2021:

9:02 AM Changeset [6520] by Nicklas Nordborg
Changes for future release Reggie 4.35
9:00 AM Milestone Reggie v4.34 completed
See Reggie extension page for more information.
8:59 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.34 (diff)
8:59 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.34 (diff)
8:57 AM reggie-4.34.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.34
8:57 AM Tickets #1343,​1346 batch updated by Nicklas Nordborg
fixed
8:55 AM Changeset [6519] by Nicklas Nordborg
Tagging Reggie 4.34
8:55 AM Changeset [6518] by Nicklas Nordborg
Preparing to release Reggie 4.34

Dec 7, 2021:

2:50 PM Ticket #1346 (Implement support for OncoArray SNP data) updated by Nicklas Nordborg
In 6517: […]
2:50 PM Changeset [6517] by Nicklas Nordborg
References #1346: Implement support for OncoArray SNP data Added …
1:29 PM Ticket #1346 (Implement support for OncoArray SNP data) updated by Nicklas Nordborg
In 6516: […]
1:29 PM Changeset [6516] by Nicklas Nordborg
References #1346: Implement support for OncoArray SNP data Hide the …
1:29 PM Ticket #1346 (Implement support for OncoArray SNP data) updated by Nicklas Nordborg
In 6515: […]
1:28 PM Changeset [6515] by Nicklas Nordborg
References #1346: Implement support for OncoArray SNP data Added the …
9:57 AM Ticket #1346 (Implement support for OncoArray SNP data) updated by Nicklas Nordborg
In 6514: […]
9:57 AM Changeset [6514] by Nicklas Nordborg
References #1346: Implement support for OncoArray SNP data …
9:57 AM Ticket #1346 (Implement support for OncoArray SNP data) updated by Nicklas Nordborg
In 6513: […]
9:57 AM Changeset [6513] by Nicklas Nordborg
References #1346: Implement support for OncoArray SNP data …

Dec 6, 2021:

2:28 PM Ticket #1346 (Implement support for OncoArray SNP data) updated by Nicklas Nordborg
In 6512: […]
2:28 PM Changeset [6512] by Nicklas Nordborg
References #1346: Implement support for OncoArray SNP data Added …
9:52 AM Ticket #1346 (Implement support for OncoArray SNP data) updated by Nicklas Nordborg
In 6511: […]
9:52 AM Changeset [6511] by Nicklas Nordborg
References #1346: Implement support for OncoArray SNP data Added …

Dec 3, 2021:

9:30 AM Milestone Reggie v4.33.5 completed
Bug fixes and enhancements for Reggie 4.33.4. Revision Log: …
9:29 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.33.5 (diff)
9:26 AM reggie-4.33.5.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.33.5
9:24 AM Changeset [6510] by Nicklas Nordborg
Merge Reggie 4.33.5 to the trunk
9:17 AM Changeset [6509] by Nicklas Nordborg
Tagging Reggie 4.33.5
9:16 AM Changeset [6508] by Nicklas Nordborg
Preparing to release Reggie 4.33.5
9:13 AM Ticket #1349 (Updates to registration of specimen handled by external lab) closed by Nicklas Nordborg
fixed: Closing this in preparation for a release. It should now be possible …
9:07 AM Ticket #1350 (The "Personal information registration" wizard should be able to ...) closed by Nicklas Nordborg
fixed
8:49 AM Ticket #1350 (The "Personal information registration" wizard should be able to ...) updated by Nicklas Nordborg
In 6507: […]
8:49 AM Changeset [6507] by Nicklas Nordborg
References #1350: The "Personal information registration" wizard …
8:19 AM Ticket #1350 (The "Personal information registration" wizard should be able to ...) updated by Nicklas Nordborg
In 6506: […]
8:19 AM Changeset [6506] by Nicklas Nordborg
References #1350: The "Personal information registration" wizard …

Dec 2, 2021:

12:57 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6505: […]
12:57 PM Changeset [6505] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
11:12 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6504: […]
11:12 AM Changeset [6504] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
10:18 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6503: […]
10:18 AM Changeset [6503] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
9:33 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6502: […]
9:33 AM Changeset [6502] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
9:01 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6501: […]
9:01 AM Changeset [6501] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
9:00 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6500: […]
9:00 AM Changeset [6500] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …

Dec 1, 2021:

3:37 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6499: […]
3:37 PM Changeset [6499] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
3:36 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6498: […]
3:36 PM Changeset [6498] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
2:36 PM Ticket #1351 (The "Pathology referral form wizard" allow empty personal number) updated by Nicklas Nordborg
In 6497: […]
2:36 PM Changeset [6497] by Nicklas Nordborg
Fixes #1351: The "Pathology referral form wizard" allow empty personal …
2:09 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6496: […]
2:09 PM Changeset [6496] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
1:37 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6495: […]
1:37 PM Changeset [6495] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
9:20 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6494: […]
9:20 AM Changeset [6494] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
9:11 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6493: […]
9:11 AM Changeset [6493] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
9:07 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6492: […]
9:07 AM Changeset [6492] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
9:02 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6491: […]
9:02 AM Changeset [6491] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
8:52 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6490: […]
8:52 AM Changeset [6490] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
8:47 AM Ticket #1351 (The "Pathology referral form wizard" allow empty personal number) closed by Nicklas Nordborg
fixed: In 6489: […]
8:47 AM Changeset [6489] by Nicklas Nordborg
Fixes #1351: The "Pathology referral form wizard" allow empty personal …
7:43 AM Ticket #1351 (The "Pathology referral form wizard" allow empty personal number) created by Nicklas Nordborg
This should be a required field.

Nov 30, 2021:

1:46 PM Ticket #1350 (The "Personal information registration" wizard should be able to ...) updated by Nicklas Nordborg
In 6488: […]
1:46 PM Changeset [6488] by Nicklas Nordborg
References #1350: The "Personal information registration" wizard …

Nov 29, 2021:

1:08 PM Ticket #1350 (The "Personal information registration" wizard should be able to ...) updated by Nicklas Nordborg
In 6487: […]
1:08 PM Changeset [6487] by Nicklas Nordborg
References #1350: The "Personal information registration" wizard …
9:30 AM Ticket #1350 (The "Personal information registration" wizard should be able to ...) updated by Nicklas Nordborg
In 6486: […]
9:30 AM Changeset [6486] by Nicklas Nordborg
References #1350: The "Personal information registration" wizard …

Nov 26, 2021:

2:01 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6485: […]
2:01 PM Changeset [6485] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
1:00 PM Ticket #1350 (The "Personal information registration" wizard should be able to ...) updated by Nicklas Nordborg
In 6484: […]
12:59 PM Changeset [6484] by Nicklas Nordborg
References #1350: The "Personal information registration" wizard …
11:51 AM Ticket #1350 (The "Personal information registration" wizard should be able to ...) created by Nicklas Nordborg
When specimen tubes are received by the lab some of the information is …
11:37 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
Description changed
11:34 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
Status, Description changed

Nov 23, 2021:

1:24 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6483: […]
1:24 PM Changeset [6483] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …

Nov 22, 2021:

2:23 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6482: […]
2:23 PM Changeset [6482] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
1:06 PM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6481: […]
1:06 PM Changeset [6481] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
8:40 AM Ticket #1349 (Updates to registration of specimen handled by external lab) updated by Nicklas Nordborg
In 6480: […]
8:40 AM Changeset [6480] by Nicklas Nordborg
References #1349: Updates to registration of specimen handled by …
8:34 AM Ticket #1349 (Updates to registration of specimen handled by external lab) created by Nicklas Nordborg
See #1347 and #1295 for background. More changes that are needed …
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