Timeline
Oct 20, 2021:
- 1:57 PM Changeset [6449] by
- Merge Reggie 4.33.3 to the trunk.
- 1:53 PM Milestone Reggie v4.33.3 completed
- Bug fixes and enhancements for Reggie 4.33.2. Revision Log: …
- 1:52 PM net.sf.basedb.reggie edited by
- Released Reggie 4.33.3 (diff)
- 1:50 PM Changeset [6448] by
- Tagging Reggie 4.33.3
- 1:49 PM Changeset [6447] by
- Preparing to release Reggie 4.33.3
- 1:48 PM Ticket #1344 (Merge changes from Reggie 4.31.1 to 4.33.3) closed by
- fixed: In 6446: […]
- 1:48 PM Changeset [6446] by
- Fixes #1344: Merge changes from Reggie 4.31.1 to 4.33.3 The changes …
- 1:47 PM Ticket #1344 (Merge changes from Reggie 4.31.1 to 4.33.3) updated by
-
Summary changed
- 1:39 PM Ticket #1344 (Merge changes from Reggie 4.31.1 to 4.33.3) created by
- It seems like the changes made in Reggie 4.31.1 that was implemented …
- 11:18 AM Ticket #1343 (Manual genotype check of standalone VCF files) updated by
- In 6445: […]
- 11:18 AM Changeset [6445] by
- References #1343: Manual genotype check of standalone VCF files …
Oct 19, 2021:
- 1:27 PM Ticket #1343 (Manual genotype check of standalone VCF files) updated by
- In 6444: […]
- 1:27 PM Changeset [6444] by
- References #1343: Manual genotype check of standalone VCF files …
- 8:18 AM Ticket #1343 (Manual genotype check of standalone VCF files) updated by
- In 6443: […]
- 8:18 AM Changeset [6443] by
- References #1343: Manual genotype check of standalone VCF files …
Oct 18, 2021:
- 12:53 PM Ticket #1343 (Manual genotype check of standalone VCF files) updated by
- In 6442: […]
- 12:53 PM Changeset [6442] by
- References #1343: Manual genotype check of standalone VCF files …
- 12:53 PM Ticket #1343 (Manual genotype check of standalone VCF files) updated by
- In 6441: […]
- 12:53 PM Changeset [6441] by
- References #1343: Manual genotype check of standalone VCF files …
- 8:56 AM Ticket #1343 (Manual genotype check of standalone VCF files) created by
- Sometimes it would be useful to be able to take a standalone VCF file …
Oct 11, 2021:
- 1:47 PM Changeset [6440] by
- Merged Reggie 4.33.2 to the trunk.
- 1:45 PM Milestone Reggie v4.33.2 completed
- Bug fixes and enhancements for Reggie 4.33.1. Revision Log: …
- 1:44 PM net.sf.basedb.reggie edited by
- Released Reggie 4.33.2 (diff)
- 1:42 PM Changeset [6439] by
- Tagging Reggie 4.33.2
- 1:42 PM Changeset [6438] by
- Preparing to release Reggie 4.33.2
- 1:18 PM Ticket #1342 (NullPointerException when running "Reference date and linked cases" wizard) closed by
- fixed: In 6437: […]
- 1:18 PM Changeset [6437] by
- Fixes #1342: NullPointerException when running "Reference date and …
- 12:57 PM Ticket #1342 (NullPointerException when running "Reference date and linked cases" wizard) created by
- It stops with an error message: `Cannot invoke …
Oct 7, 2021:
- 11:25 AM Changeset [6436] by
- Merge Reggie 4.33.1 to the trunk
- 8:33 AM Milestone Reggie v4.33.1 completed
- Bug fixes and enhancements for Reggie 4.33. Revision Log: …
- 8:33 AM net.sf.basedb.reggie edited by
- Released Reggie 4.33.1 (diff)
- 8:30 AM Changeset [6435] by
- Tagging Reggie 4.33.1
- 8:29 AM Changeset [6434] by
- Preparing to release Reggie 4.33.1
- 8:28 AM Ticket #1340 (The legacy pipeline should have lower priority when started via ...) closed by
- fixed
- 8:27 AM Ticket #1341 (Re-arrange the start page) closed by
- fixed: In 6433: […]
- 8:27 AM Changeset [6433] by
- Fixes #1341: Re-arrange the start page
- 8:26 AM Ticket #1341 (Re-arrange the start page) created by
- The MIPS section is not used so I think we could hide it. The "RNA …
Oct 6, 2021:
- 2:24 PM Ticket #1340 (The legacy pipeline should have lower priority when started via ...) updated by
- In 6432: […]
- 2:24 PM Changeset [6432] by
- References #1340: The legacy pipeline should have lower priority when …
- 2:06 PM Ticket #1340 (The legacy pipeline should have lower priority when started via ...) updated by
- In 6431: […]
- 2:06 PM Changeset [6431] by
- References #1340: The legacy pipeline should have lower priority when …
- 1:37 PM Ticket #1340 (The legacy pipeline should have lower priority when started via ...) created by
- The auto-confirmation after demux create jobs for both the legacy …
- 8:33 AM Ticket #1339 (ReadLengthAvg annotations are -1) closed by
- fixed: In 6430: […]
- 8:33 AM Changeset [6430] by
- Fixes #1339: ReadLengthAvg annotations are -1 Also modified the code …
Oct 5, 2021:
- 2:08 PM Ticket #1339 (ReadLengthAvg annotations are -1) updated by
- The items that have -1 need to be updated manually and the results in …
- 1:49 PM Ticket #1339 (ReadLengthAvg annotations are -1) updated by
-
Milestone changed
- 1:48 PM Changeset [6429] by
- Creating bugfix branch for Reggie 4.33
- 1:44 PM Ticket #1339 (ReadLengthAvg annotations are -1) created by
- For the latest sequencing run, there is only one merged item that has …
Sep 29, 2021:
- 9:34 AM net.sf.basedb.reggie/notes433 edited by
- (diff)
- 9:10 AM Changeset [6428] by
- Changes for future version Reggie 4.34
- 9:09 AM Milestone Reggie v4.33 completed
- See Reggie extension page for more information.
- 9:08 AM net.sf.basedb.reggie edited by
- Added link to update notes for Reggie 4.33 (diff)
- 9:08 AM net.sf.basedb.reggie/notes433 created by
- 9:06 AM net.sf.basedb.reggie edited by
- Released Reggie 4.33 (diff)
- 9:03 AM Changeset [6427] by
- Tagging Reggie 4.33
- 9:03 AM Changeset [6426] by
- Preparing to release Reggie 4.33
- 9:00 AM Ticket #1338 (Sort order in case summary) closed by
- fixed: In 6425: […]
- 9:00 AM Changeset [6425] by
- Fixes #1338: Sort order in case summary
- 8:59 AM Ticket #1338 (Sort order in case summary) created by
- Items in the case summary are typically sorted by name. But this has a …
Sep 28, 2021:
- 10:11 AM Ticket #1337 (Bug in Tophat when --mate-inner-dist + --mate-std-dev < 0) updated by
- This bug may also be related to #1325. The same bug is also present in …
- 9:44 AM Ticket #1335 (Calculate average read length in FASTQ files after Trimmomatic) closed by
- fixed
- 9:44 AM Ticket #1335 (Calculate average read length in FASTQ files after Trimmomatic) updated by
- In 6424: […]
- 9:44 AM Changeset [6424] by
- References #1335: Calculate average read length in FASTQ files after …
- 8:56 AM Ticket #1337 (Bug in Tophat when --mate-inner-dist + --mate-std-dev < 0) closed by
- fixed: In 6423: […]
- 8:56 AM Changeset [6423] by
- Fixes #1337: Bug in Tophat when --mate-inner-dist + --mate-std-dev < 0
- 8:45 AM Ticket #1337 (Bug in Tophat when --mate-inner-dist + --mate-std-dev < 0) updated by
-
Description changed
- 8:43 AM Ticket #1337 (Bug in Tophat when --mate-inner-dist + --mate-std-dev < 0) created by
- This was initially thought to be a problem with an incorrect value for …
- 8:32 AM Ticket #1336 (Use the average read length from FASTQ files when calculating ...) closed by
- fixed: In 6422: […]
- 8:32 AM Changeset [6422] by
- Fixes #1336: Use the average read length from FASTQ files when …
- 8:28 AM Ticket #1336 (Use the average read length from FASTQ files when calculating ...) updated by
-
Summary changed
Sep 23, 2021:
- 12:41 PM Ticket #1336 (Use the average read length from FASTQ files when calculating ...) created by
- See #1335. If the values from the FASTQ files are available, we should …
- 12:39 PM Ticket #1335 (Calculate average read length in FASTQ files after Trimmomatic) updated by
- In 6421: […]
- 12:39 PM Changeset [6421] by
- References #1335: Calculate average read length in FASTQ files after …
- 9:07 AM Ticket #1335 (Calculate average read length in FASTQ files after Trimmomatic) updated by
- In 6420: […]
- 9:07 AM Changeset [6420] by
- References #1335: Calculate average read length in FASTQ files after …
- 8:02 AM Ticket #1335 (Calculate average read length in FASTQ files after Trimmomatic) updated by
- In 6419: […]
- 8:02 AM Changeset [6419] by
- References #1335: Calculate average read length in FASTQ files after …
- 7:42 AM Ticket #1335 (Calculate average read length in FASTQ files after Trimmomatic) created by
- In the legacy pipeline we need the average inner distance between R1 …
Sep 20, 2021:
- 9:57 AM PluginDownload edited by
- Released Reggie 4.32.1 and Variant Search 1.3 (diff)
- 9:56 AM Changeset [6418] by
- Changes for future release Variant Search 1.4
- 9:55 AM Tickets #1328,1330,1331,1333 batch updated by
-
Milestone changed
Milestone renamed - 9:55 AM Milestone Variant Search v1.3 completed
- See Variant Search extension page for …
- 9:54 AM net.sf.basedb.varsearch edited by
- Released Variant Search 1.3 (diff)
- 9:52 AM Changeset [6417] by
- Tagging Variant search 1.3
- 9:52 AM Changeset [6416] by
- Preparing to release Variant search 1.3
- 9:50 AM Changeset [6415] by
- Changes for future release Reggie 4.33
- 9:49 AM Tickets #1329,1332,1334,1327 batch updated by
-
Milestone changed
Milestone renamed - 9:49 AM Milestone Reggie v4.32.1 completed
- See Reggie extension page for more information.
- 9:48 AM net.sf.basedb.reggie edited by
- Released Reggie 4.32.1 (diff)
- 9:46 AM Changeset [6414] by
- Tagging Reggie 4.32.1
- 9:45 AM Changeset [6413] by
- Remove debug flag.
- 9:44 AM Changeset [6412] by
- Preparing to relase Reggie 4.32.1
- 9:43 AM Ticket #1334 (Targeted genotyping should include number of variants found in the ...) updated by
- In 6411: […]
- 9:43 AM Changeset [6411] by
- References #1334: Targeted genotyping should include number of …
- 9:07 AM Ticket #1334 (Targeted genotyping should include number of variants found in the ...) closed by
- fixed: In 6410: […]
- 9:07 AM Changeset [6410] by
- Fixes #1334: Targeted genotyping should include number of variants …
- 9:06 AM Ticket #1334 (Targeted genotyping should include number of variants found in the ...) created by
- 8:39 AM Ticket #1332 (Add new translation for CMD library protocol for the showcase report) closed by
- fixed: In 6409: […]
- 8:39 AM Changeset [6409] by
- Fixes #1332: Add new translation for CMD library protocol for the …
- 8:34 AM Ticket #1333 (A disabled index still show up as an available column) closed by
- fixed: In 6408: […]
- 8:34 AM Changeset [6408] by
- Fixes #1333: A disabled index still show up as an available column …
- 8:21 AM Ticket #1333 (A disabled index still show up as an available column) created by
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