Timeline
Jun 23, 2021:
- 3:26 PM Ticket #1322 (Borås should use the '99' referral form types) created by
- Ticket #1309 implemented a referral ID generator. Depending on the …
Jun 18, 2021:
- 12:50 PM Ticket #1299 (Import of FASTQ files from external lab) updated by
- In 6339: […]
- 12:50 PM Changeset [6339] by
- References #1299: Import of FASTQ files from external lab Progress …
- 12:50 PM Ticket #1295 (Registration of specimen handled by external lab) updated by
- In 6338: […]
- 12:50 PM Changeset [6338] by
- References #1295: Registration of specimen handled by external lab …
Jun 16, 2021:
- 12:48 PM Tickets #1288,1302,1320 batch updated by
- fixed
- 12:47 PM Ticket #1320 (Named transactions) updated by
- In 6337: […]
- 12:47 PM Changeset [6337] by
- References #1320: Named transactions Fixed in all the remaining wizards.
- 8:58 AM Ticket #1320 (Named transactions) updated by
- In 6336: […]
- 8:58 AM Changeset [6336] by
- References #1320: Named transactions Fixed in several batch update, …
Jun 15, 2021:
- 2:51 PM Ticket #1320 (Named transactions) updated by
- In 6335: […]
- 2:51 PM Changeset [6335] by
- References #1320: Named transactions Fixed in the "Secondary analysis …
- 1:46 PM Ticket #1320 (Named transactions) updated by
- In 6334: […]
- 1:46 PM Changeset [6334] by
- References #1320: Named transactions Fixed in the "Sequencing wizards".
- 11:25 AM Ticket #1320 (Named transactions) updated by
- In 6333: […]
- 11:25 AM Changeset [6333] by
- References #1320: Named transactions Fixed in the "Library …
- 9:37 AM Ticket #1320 (Named transactions) updated by
- In 6332: […]
- 9:37 AM Changeset [6332] by
- References #1320: Named transactions Fixed in the "Histology wizards".
- 8:53 AM Ticket #1321 (Warnings in the Tomcat log file) closed by
- fixed: In 6331: […]
- 8:53 AM Changeset [6331] by
- Fixes #1321: Warnings in the Tomcat log file Removed the references …
- 8:48 AM Ticket #1321 (Warnings in the Tomcat log file) created by
- Sometimes we get warnings in the Tomcat log file like this: […] …
Jun 14, 2021:
- 3:59 PM Ticket #1320 (Named transactions) updated by
- In 6330: […]
- 3:59 PM Changeset [6330] by
- References #1320: Named transactions Fixed in the "Sample processing …
- 3:23 PM Ticket #1320 (Named transactions) updated by
- In 6329: […]
- 3:23 PM Changeset [6329] by
- References #1320: Named transactions Fixed in the "Personal …
- 1:26 PM Ticket #1320 (Named transactions) updated by
- In 6328: […]
- 1:26 PM Changeset [6328] by
- References #1320: Named transactions Fixed in the installation …
- 1:24 PM Ticket #1320 (Named transactions) updated by
-
Status changed
- 11:18 AM Ticket #1314 (Switch to BASE 3.19) closed by
- fixed: In 6327: […]
- 11:18 AM Changeset [6327] by
- Fixes #1314: Switch to BASE 3.19
- 11:18 AM Ticket #1320 (Named transactions) created by
- Once #1314 has been fixed it would be nice to use the "Named …
- 11:08 AM Ticket #1314 (Switch to BASE 3.19) updated by
-
Status, Milestone changed
- 9:06 AM Changeset [6326] by
- Merge Reggie 4.31.3 to the trunk
- 8:35 AM Changeset [6325] by
- Changes for future release Reggie 4.31.4
- 8:33 AM Milestone Reggie v4.31.3 completed
- Bug fixes and enhancements for Reggie 4.31.2. Revision Log: …
- 8:32 AM PluginDownload edited by
- Released Reggie 4.31.3 (diff)
- 8:32 AM net.sf.basedb.reggie edited by
- Released Reggie 4.31.3 (diff)
- 8:29 AM Changeset [6324] by
- Tagging Reggie 4.31.3
- 8:28 AM Changeset [6323] by
- Preparing to release Reggie 4.31.3
- 8:24 AM Ticket #1315 (Support more item types in the outtake wizard) closed by
- fixed
Jun 11, 2021:
- 3:52 PM Ticket #1316 (Switch to Job Scheduler 1.4) closed by
- fixed: In 6322: […]
- 3:52 PM Changeset [6322] by
- Fixes #1316: Switch to Job Scheduler 1.4
- 3:43 PM net.sf.basedb.opengrid edited by
- Fixed incorrect link to changelog for v1.4 (diff)
- 2:35 PM Changeset [6321] by
- Changes for future release Job scheduler extension 1.5
- 2:34 PM Milestone Job scheduler extension v1.4 completed
- See the Job scheduler extension page for …
- 2:31 PM net.sf.basedb.opengrid edited by
- Released Job scheduler extension 1.4 (diff)
- 2:27 PM Changeset [6320] by
- Changes for future release External files support 1.7
- 2:26 PM Changeset [6319] by
- Tagging Job scheduler extension 1.4
- 2:25 PM Changeset [6318] by
- Preparing to release Job scheduler extension 1.4
- 2:22 PM Milestone External files support 1.6 completed
- An extension package containing support for additional protocols to …
- 2:22 PM net.sf.basedb.xfiles edited by
- Released External files support 1.6 (diff)
- 2:19 PM Changeset [6317] by
- Tagging External files support 1.6
- 2:18 PM Changeset [6316] by
- Preparing to release External file support 1.6
- 2:15 PM Ticket #1319 (Update SSH library to version 0.31.0) closed by
- fixed: In 6315: […]
- 2:15 PM Changeset [6315] by
- Fixes #1319: Update SSH library to version 0.31.0
- 2:03 PM Ticket #1318 (Switch to BASE 3.18) closed by
- fixed: In 6314: […]
- 2:03 PM Changeset [6314] by
- Fixes #1318: Switch to BASE 3.18
- 1:52 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6313: […]
- 1:52 PM Changeset [6313] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:51 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6312: […]
- 1:51 PM Changeset [6312] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:48 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6311: […]
- 1:48 PM Changeset [6311] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:46 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6310: […]
- 1:46 PM Changeset [6310] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:45 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6309: […]
- 1:45 PM Changeset [6309] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:43 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6308: […]
- 1:43 PM Changeset [6308] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:42 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6307: […]
- 1:42 PM Changeset [6307] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:39 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6306: […]
- 1:39 PM Changeset [6306] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 1:36 PM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6305: […]
- 1:36 PM Changeset [6305] by
- References #1317: base.thep.lu.se is moving to https Fixed links in …
- 11:44 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
-
Description changed
- 11:04 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6304: […]
- 11:04 AM Changeset [6304] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 11:04 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6303: […]
- 11:04 AM Changeset [6303] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 11:03 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6302: […]
- 11:03 AM Changeset [6302] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 11:02 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6301: […]
- 11:02 AM Changeset [6301] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 11:02 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6300: […]
- 11:02 AM Changeset [6300] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 11:01 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6299: […]
- 11:01 AM Changeset [6299] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 11:01 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6298: […]
- 11:01 AM Changeset [6298] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 10:59 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6297: […]
- 10:59 AM Changeset [6297] by
- References #1317: base.thep.lu.se is moving to https Fixed in the OTP …
- 10:58 AM Ticket #1319 (Update SSH library to version 0.31.0) created by
- 10:57 AM Ticket #1318 (Switch to BASE 3.18) created by
- 10:56 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6296: […]
- 10:56 AM Changeset [6296] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 10:56 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6295: […]
- 10:56 AM Changeset [6295] by
- References #1317: base.thep.lu.se is moving to https Fixed in the …
- 10:53 AM Tickets #183,210 batch updated by
-
Milestone changed
Milestone renamed - 10:53 AM Tickets #267,552,118,119,120,161,166,168,176,177,184,186,187,190,191,195,197,206,208,225,228,247,268,280,331,541,551 batch updated by
-
Milestone changed
Milestone renamed - 10:52 AM Ticket #1156 (Switch to Java 11 and BASE 3.15) updated by
-
Milestone changed
Milestone renamed - 10:52 AM Tickets #126,196 batch updated by
-
Milestone changed
Milestone renamed - 10:51 AM Tickets #463,363 batch updated by
-
Milestone changed
Milestone renamed - 10:50 AM Ticket #1262 (Upgrade ssh library) closed by
- fixed: In 6294: […]
- 10:50 AM Changeset [6294] by
- Fixes #1262: Upgrade ssh library Updated to 0.31.0.
- 10:42 AM Ticket #1317 (base.thep.lu.se is moving to https) updated by
- In 6293: […]
- 10:42 AM Changeset [6293] by
- References #1317: base.thep.lu.se is moving to https Fixed in the Job …
- 10:41 AM Ticket #1261 (Switch to BASE 3.18) closed by
- fixed: In 6292: […]
- 10:41 AM Changeset [6292] by
- Fixes #1261: Switch to BASE 3.18
- 10:39 AM Ticket #1317 (base.thep.lu.se is moving to https) created by
- This affects a lot of extension build scripts. Those that have `ant …
- 10:30 AM Ticket #1262 (Upgrade ssh library) reopened by
- Version 0.31 is now available.
- 10:30 AM Ticket #1261 (Switch to BASE 3.18) reopened by
- Might as well move to BASE 3.18 since that is the current version.
- 10:29 AM Ticket #1316 (Switch to Job Scheduler 1.4) created by
- Even if the Slurm cluster is not yet available I think we should …
- 10:20 AM Ticket #1259 (Add support for Slurm) closed by
- fixed: There are probably still issues with Slurm depending on configuration …
- 10:16 AM Ticket #1263 (The ScriptBuilder API should perform simple indentation automatically) closed by
- fixed
- 10:15 AM Ticket #1278 (Improve timeout handling when executing commands on remote server) closed by
- fixed
- 9:46 AM PluginDownload edited by
- Added Variant Search extension (diff)
- 9:42 AM PluginDownload edited by
- Released Print package 1.5 (diff)
- 9:41 AM Changeset [6291] by
- Changes for future release Print package 1.6
- 9:40 AM Milestone Print package v1.5 completed
- See Print package extension page for more …
- 9:39 AM net.sf.basedb.print edited by
- Released Print package 1.5 (diff)
- 9:37 AM Changeset [6290] by
- Tagging Print package 1.5
- 9:36 AM Changeset [6289] by
- Preparing to release Print package 1.5
- 9:32 AM Changeset [6288] by
- Changes for future release Variant Search 1.2
- 9:31 AM Milestone Variant Search v1.1 completed
- See Variant Search extension page for …
- 9:30 AM net.sf.basedb.varsearch edited by
- Released Variant Search 1.1 (diff)
- 9:27 AM Changeset [6287] by
- Tagging Variant Search 1.1
- 9:26 AM Changeset [6286] by
- Preparing to release Variant Search 1.1
- 9:24 AM net.sf.basedb.varsearch/using edited by
- Timeout trigger has changed from / to # (diff)
- 9:13 AM net.sf.basedb.varsearch/install edited by
- Added information about indexing VCF files and the Index Manager (diff)
- 8:34 AM net.sf.basedb.varsearch/install created by
- Started to write installation instructions for the Variant Search …
Jun 10, 2021:
- 3:52 PM Ticket #1315 (Support more item types in the outtake wizard) updated by
- In 6285: […]
- 3:52 PM Changeset [6285] by
- References #1315: Support more item types in the outtake wizard The …
- 1:50 PM Ticket #1315 (Support more item types in the outtake wizard) updated by
- In 6284: […]
- 1:50 PM Changeset [6284] by
- References #1315: Support more item types in the outtake wizard Store …
- 11:39 AM se.lu.onk.BaseFile edited by
- (diff)
- 11:39 AM se.lu.onk.MergeBioAssay edited by
- (diff)
- 11:38 AM se.lu.onk.ReplicateError edited by
- (diff)
- 11:38 AM se.lu.onk.Center edited by
- (diff)
- 11:38 AM net.sf.basedb.normalizers edited by
- (diff)
- 11:37 AM se.lu.onk.VirtualArray edited by
- (diff)
- 11:36 AM net.sf.basedb.agilent edited by
- (diff)
- 11:36 AM se.lu.thep.WeNNI edited by
- (diff)
- 11:00 AM net.sf.basedb.reggie/notes216 edited by
- (diff)
- 11:00 AM net.sf.basedb.reggie/notes32 edited by
- (diff)
- 11:00 AM net.sf.basedb.mev edited by
- (diff)
- 9:24 AM Ticket #1315 (Support more item types in the outtake wizard) updated by
- In 6283: […]
- 9:24 AM Changeset [6283] by
- References #1315: Support more item types in the outtake wizard The …
- 8:56 AM Ticket #1315 (Support more item types in the outtake wizard) updated by
- In 6282: […]
- 8:56 AM Changeset [6282] by
- References #1315: Support more item types in the outtake wizard Added …
Jun 9, 2021:
- 7:28 PM se.lu.thep.affymetrix edited by
- (diff)
- 7:27 PM se.lu.thep.WeNNI edited by
- (diff)
- 7:26 PM net.sf.basedb.agilent edited by
- (diff)
- 7:26 PM net.sf.basedb.torrent edited by
- (diff)
- 7:25 PM net.sf.basedb.examples.plugins edited by
- (diff)
- 7:25 PM net.sf.basedb.hdfs edited by
- (diff)
- 7:25 PM no.uib.cbu.base.magetabexport edited by
- (diff)
- 7:24 PM net.sf.basedb.brcareg edited by
- (diff)
- 7:24 PM se.lu.onk.VirtualArray edited by
- (diff)
- 7:23 PM net.sf.basedb.normalizers edited by
- (diff)
- 7:23 PM net.sf.basedb.mev edited by
- (diff)
- 7:22 PM net.sf.basedb.examples.webservices edited by
- (diff)
- 7:22 PM net.sf.basedb.ftp edited by
- (diff)
- 7:21 PM net.sf.basedb.illumina edited by
- (diff)
- 7:21 PM net.sf.basedb.examplecode edited by
- (diff)
- 7:20 PM net.sf.basedb.meludi edited by
- (diff)
- 7:20 PM net.sf.basedb.inca edited by
- (diff)
- 7:20 PM net.sf.basedb.xfiles edited by
- (diff)
- 7:19 PM net.sf.basedb.otp edited by
- (diff)
- 7:19 PM net.sf.basedb.yubikey edited by
- (diff)
- 7:19 PM net.sf.basedb.labenv edited by
- (diff)
- 7:18 PM net.sf.basedb.relax edited by
- (diff)
- 7:18 PM net.sf.basedb.opengrid edited by
- (diff)
- 7:17 PM net.sf.basedb.thumbnails edited by
- (diff)
- 7:17 PM net.sf.basedb.print edited by
- (diff)
- 7:16 PM net.sf.basedb.varsearch edited by
- (diff)
- 7:16 PM net.sf.basedb.reggie edited by
- (diff)
- 2:45 PM Ticket #1315 (Support more item types in the outtake wizard) created by
- The outtake wizard currently support RNA and DNA (#913). It would be …
- 8:24 AM Ticket #1288 (Select libraries for demuxing in the demux wizard) updated by
- In 6281: […]
- 8:24 AM Changeset [6281] by
- References #1288: Select libraries for demuxing in the demux wizard …
- 8:24 AM Ticket #1288 (Select libraries for demuxing in the demux wizard) updated by
- In 6280: […]
- 8:24 AM Changeset [6280] by
- References #1288: Select libraries for demuxing in the demux wizard …
- 8:09 AM Ticket #1288 (Select libraries for demuxing in the demux wizard) updated by
-
Status, Milestone changed
Jun 7, 2021:
- 3:56 PM Ticket #1314 (Switch to BASE 3.19) created by
- This will happen some time in the future. The ticket is added here …
Jun 4, 2021:
- 10:28 AM Ticket #1313 (Varsearch css interferes with BASE CSS) closed by
- fixed: In 6279: […]
- 10:28 AM Changeset [6279] by
- Fixes #1313: Varsearch css interferes with BASE CSS Added ID selector …
- 10:07 AM Ticket #1312 (Hide column is not working) closed by
- fixed: In 6278: […]
- 10:07 AM Changeset [6278] by
- Fixes #1312: Hide column is not working A typo in the method name.
- 9:01 AM Ticket #1313 (Varsearch css interferes with BASE CSS) created by
- Lazy-loading indicators are missing from the raw bioassay table. This …
Jun 3, 2021:
- 3:46 PM Changeset [6277] by
- Merge Reggie 4.31.2 to the trunk.
- 3:22 PM Changeset [6276] by
- Changes for future release Reggie 4.31.3
- 3:20 PM Milestone Reggie v4.31.2 completed
- Bug fixes and enhancements for Reggie 4.31.1. Revision Log: …
- 3:19 PM PluginDownload edited by
- Released Reggie 4.31.2 (diff)
- 3:19 PM net.sf.basedb.reggie edited by
- Fixed link (diff)
- 3:18 PM net.sf.basedb.reggie edited by
- Released Reggie 4.31.2 (diff)
- 3:16 PM Ticket #1309 (ID generator for new referral forms) closed by
- fixed
- 3:13 PM Changeset [6275] by
- Tagging Reggie 4.31.2
- 3:13 PM Changeset [6274] by
- Preparing to release Reggie 4.31.2
Jun 2, 2021:
- 9:11 AM Ticket #1309 (ID generator for new referral forms) updated by
- In 6273: […]
- 9:11 AM Changeset [6273] by
- References #1309: ID generator for new referral forms Remove unused …
- 9:07 AM Ticket #1309 (ID generator for new referral forms) updated by
- In 6272: […]
- 9:07 AM Changeset [6272] by
- References #1309: ID generator for new referral forms New entries to …
- 8:15 AM Ticket #1310 (Implement support for a prefix in the blood referral forms) closed by
- fixed: In 6271: […]
- 8:15 AM Changeset [6271] by
- Fixes #1310: Implement support for a prefix in the blood referral …
Jun 1, 2021:
- 2:36 PM Ticket #1309 (ID generator for new referral forms) updated by
- In 6270: […]
- 2:36 PM Changeset [6270] by
- References #1309: ID generator for new referral forms Change the …
- 8:37 AM Ticket #1309 (ID generator for new referral forms) updated by
- In 6269: […]
- 8:37 AM Changeset [6269] by
- References #1309: ID generator for new referral forms The new …
May 31, 2021:
- 2:15 PM se.lu.onk.IlluminaSNPNormalization edited by
- (diff)
- 2:10 PM se.lu.onk.BAFsegmentation edited by
- (diff)
May 28, 2021:
- 11:22 AM Ticket #1309 (ID generator for new referral forms) updated by
- In 6268: […]
- 11:22 AM Changeset [6268] by
- References #1309: ID generator for new referral forms Removed code …
- 10:17 AM Ticket #1312 (Hide column is not working) created by
- When trying to hide a sub-column in the variant column using the 'x' …
- 10:02 AM Changeset [6267] by
- Changes for future release Variant Search 1.1
- 10:01 AM Milestone Variant Search v1.0 completed
- See Variant Search extension page for …
- 10:00 AM Tickets #1290,1296,1297,1298 batch updated by
- fixed
- 9:59 AM net.sf.basedb.varsearch edited by
- Released Variant Search 1.0 (diff)
- 9:50 AM Changeset [6266] by
- Tagging Variant search 1.0
- 9:49 AM Changeset [6265] by
- Preparing to release Variant search 1.0
- 9:47 AM Ticket #1296 (Configure which columns to display) updated by
- In 6264: […]
- 9:47 AM Changeset [6264] by
- References #1296: Configure which columns to display Changed layout …
- 9:35 AM Ticket #1290 (Implement a variant search extension) updated by
- In 6263: […]
- 9:35 AM Changeset [6263] by
- References #1290: Implement a variant search extension Implement …
- 8:55 AM Ticket #1290 (Implement a variant search extension) updated by
- In 6262: […]
- 8:55 AM Changeset [6262] by
- References #1290: Implement a variant search extension Updated to …
- 8:24 AM Ticket #1310 (Implement support for a prefix in the blood referral forms) updated by
-
Description changed
- 8:21 AM Ticket #1311 (Changes in frozen tissue importer due to changes in referral forms) created by
- The changes in #1309 are anticipated to also affect the frozen tissue …
- 8:17 AM Ticket #1310 (Implement support for a prefix in the blood referral forms) created by
- In a near future, blood referral form will have a prefix added to …
- 8:10 AM Ticket #1309 (ID generator for new referral forms) created by
- The referral form generator implemented in #897 should be replaced …
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