Timeline



Jun 9, 2021:

7:28 PM se.lu.thep.affymetrix edited by Jari Häkkinen
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7:27 PM se.lu.thep.WeNNI edited by Jari Häkkinen
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7:26 PM net.sf.basedb.agilent edited by Jari Häkkinen
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7:26 PM net.sf.basedb.torrent edited by Jari Häkkinen
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7:25 PM net.sf.basedb.examples.plugins edited by Jari Häkkinen
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7:25 PM net.sf.basedb.hdfs edited by Jari Häkkinen
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7:25 PM no.uib.cbu.base.magetabexport edited by Jari Häkkinen
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7:24 PM net.sf.basedb.brcareg edited by Jari Häkkinen
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7:24 PM se.lu.onk.VirtualArray edited by Jari Häkkinen
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7:23 PM net.sf.basedb.normalizers edited by Jari Häkkinen
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7:23 PM net.sf.basedb.mev edited by Jari Häkkinen
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7:22 PM net.sf.basedb.examples.webservices edited by Jari Häkkinen
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7:22 PM net.sf.basedb.ftp edited by Jari Häkkinen
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7:21 PM net.sf.basedb.illumina edited by Jari Häkkinen
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7:21 PM net.sf.basedb.examplecode edited by Jari Häkkinen
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7:20 PM net.sf.basedb.meludi edited by Jari Häkkinen
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7:20 PM net.sf.basedb.inca edited by Jari Häkkinen
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7:20 PM net.sf.basedb.xfiles edited by Jari Häkkinen
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7:19 PM net.sf.basedb.otp edited by Jari Häkkinen
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7:19 PM net.sf.basedb.yubikey edited by Jari Häkkinen
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7:19 PM net.sf.basedb.labenv edited by Jari Häkkinen
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7:18 PM net.sf.basedb.relax edited by Jari Häkkinen
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7:18 PM net.sf.basedb.opengrid edited by Jari Häkkinen
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7:17 PM net.sf.basedb.thumbnails edited by Jari Häkkinen
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7:17 PM net.sf.basedb.print edited by Jari Häkkinen
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7:16 PM net.sf.basedb.varsearch edited by Jari Häkkinen
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7:16 PM net.sf.basedb.reggie edited by Jari Häkkinen
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2:45 PM Ticket #1315 (Support more item types in the outtake wizard) created by Nicklas Nordborg
The outtake wizard currently support RNA and DNA (#913). It would be …
8:24 AM Changeset [6281] by Nicklas Nordborg
References #1288: Select libraries for demuxing in the demux wizard …
8:24 AM Changeset [6280] by Nicklas Nordborg
References #1288: Select libraries for demuxing in the demux wizard …

Jun 7, 2021:

3:56 PM Ticket #1314 (Switch to BASE 3.19) created by Nicklas Nordborg
This will happen some time in the future. The ticket is added here …

Jun 4, 2021:

10:28 AM Ticket #1313 (Varsearch css interferes with BASE CSS) closed by Nicklas Nordborg
fixed: In 6279: […]
10:28 AM Changeset [6279] by Nicklas Nordborg
Fixes #1313: Varsearch css interferes with BASE CSS Added ID selector …
10:07 AM Ticket #1312 (Hide column is not working) closed by Nicklas Nordborg
fixed: In 6278: […]
10:07 AM Changeset [6278] by Nicklas Nordborg
Fixes #1312: Hide column is not working A typo in the method name.
9:01 AM Ticket #1313 (Varsearch css interferes with BASE CSS) created by Nicklas Nordborg
Lazy-loading indicators are missing from the raw bioassay table. This …

Jun 3, 2021:

3:46 PM Changeset [6277] by Nicklas Nordborg
Merge Reggie 4.31.2 to the trunk.
3:22 PM Changeset [6276] by Nicklas Nordborg
Changes for future release Reggie 4.31.3
3:20 PM Milestone Reggie v4.31.2 completed
Bug fixes and enhancements for Reggie 4.31.1. Revision Log: …
3:19 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.31.2 (diff)
3:19 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Fixed link (diff)
3:18 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.31.2 (diff)
3:17 PM reggie-4.31.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.31.2
3:16 PM Ticket #1309 (ID generator for new referral forms) closed by Nicklas Nordborg
fixed
3:13 PM Changeset [6275] by Nicklas Nordborg
Tagging Reggie 4.31.2
3:13 PM Changeset [6274] by Nicklas Nordborg
Preparing to release Reggie 4.31.2

Jun 2, 2021:

9:11 AM Changeset [6273] by Nicklas Nordborg
References #1309: ID generator for new referral forms Remove unused …
9:07 AM Changeset [6272] by Nicklas Nordborg
References #1309: ID generator for new referral forms New entries to …
8:15 AM Ticket #1310 (Implement support for a prefix in the blood referral forms) closed by Nicklas Nordborg
fixed: In 6271: […]
8:15 AM Changeset [6271] by Nicklas Nordborg
Fixes #1310: Implement support for a prefix in the blood referral …

Jun 1, 2021:

2:36 PM Changeset [6270] by Nicklas Nordborg
References #1309: ID generator for new referral forms Change the …
8:37 AM Changeset [6269] by Nicklas Nordborg
References #1309: ID generator for new referral forms The new …

May 31, 2021:

2:20 PM ReadMe_calculation_BAF_Log_R_Ratio.pdf attached to se.lu.onk.IlluminaSNPNormalization by markus
2:19 PM tQN-1.1.2.zip attached to se.lu.onk.IlluminaSNPNormalization by markus
2:17 PM human660w-quad_tQN_clusters.zip attached to se.lu.onk.IlluminaSNPNormalization by markus
2:16 PM human1M-omnia_tQN_clusters.zip attached to se.lu.onk.IlluminaSNPNormalization by markus
2:15 PM se.lu.onk.IlluminaSNPNormalization edited by Jari Häkkinen
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2:15 PM humanOmni2_5M-quad_tQN_clusters.zip attached to se.lu.onk.IlluminaSNPNormalization by markus
2:13 PM humanOmniExpress_tQN_clusters.zip attached to se.lu.onk.IlluminaSNPNormalization by markus
2:10 PM se.lu.onk.BAFsegmentation edited by Jari Häkkinen
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2:08 PM SimulatedTumorData.zip attached to se.lu.onk.BAFsegmentation by markus
Simulated Tumor Data
2:06 PM CRL2324_dilutionSeries_BeadStudio.zip attached to se.lu.onk.BAFsegmentation by markus
CRL2324 dilutionSeries BeadStudio?
2:05 PM CRL2324_dilutionSeries_TableExport.zip attached to se.lu.onk.BAFsegmentation by markus
CRL2324 dilutionSeries TableExport?
2:04 PM BAFsegmentation-1.2.0.zip attached to se.lu.onk.BAFsegmentation by markus
BAFsegmentation 1.2.0
2:03 PM BAFsegmentation-2.0pre-snapshot111209.zip attached to se.lu.onk.BAFsegmentation by markus
BAFsegmentation 2.0pre-snapshot 111209

May 28, 2021:

11:22 AM Changeset [6268] by Nicklas Nordborg
References #1309: ID generator for new referral forms Removed code …
10:17 AM Ticket #1312 (Hide column is not working) created by Nicklas Nordborg
When trying to hide a sub-column in the variant column using the 'x' …
10:02 AM Changeset [6267] by Nicklas Nordborg
Changes for future release Variant Search 1.1
10:01 AM Milestone Variant Search v1.0 completed
See Variant Search extension page for …
10:00 AM Tickets #1290,​1296,​1297,​1298 batch updated by Nicklas Nordborg
fixed
9:59 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
Released Variant Search 1.0 (diff)
9:57 AM varsearch-1.0.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.0
9:50 AM Changeset [6266] by Nicklas Nordborg
Tagging Variant search 1.0
9:49 AM Changeset [6265] by Nicklas Nordborg
Preparing to release Variant search 1.0
9:47 AM Changeset [6264] by Nicklas Nordborg
References #1296: Configure which columns to display Changed layout …
9:35 AM Changeset [6263] by Nicklas Nordborg
References #1290: Implement a variant search extension Implement …
8:55 AM Changeset [6262] by Nicklas Nordborg
References #1290: Implement a variant search extension Updated to …
8:21 AM Ticket #1311 (Changes in frozen tissue importer due to changes in referral forms) created by Nicklas Nordborg
The changes in #1309 are anticipated to also affect the frozen tissue …
8:17 AM Ticket #1310 (Implement support for a prefix in the blood referral forms) created by Nicklas Nordborg
In a near future, blood referral form will have a prefix added to …
8:10 AM Ticket #1309 (ID generator for new referral forms) created by Nicklas Nordborg
The referral form generator implemented in #897 should be replaced …

May 27, 2021:

8:56 AM Changeset [6261] by Nicklas Nordborg
References #1296: Configure which columns to display Added some …
8:07 AM Changeset [6260] by Nicklas Nordborg
References #1290: Implement a variant search extension Change the …

May 26, 2021:

11:22 AM Changeset [6259] by Nicklas Nordborg
Changes for future release Reggie 4.31.2
11:20 AM Milestone Reggie v4.31.1 completed
Bug fixes and enhancements for Reggie 4.31. Revision Log: …
11:19 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.31.1 (diff)
11:18 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.31.1 (diff)
11:17 AM reggie-4.31.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.31.1
11:15 AM Changeset [6258] by Nicklas Nordborg
Tagging Reggie 4.31.1
11:14 AM Changeset [6257] by Nicklas Nordborg
Preparing to release Reggie 4.31.1
9:26 AM Ticket #1308 (Add time intervals to the SCAN-B report) closed by Nicklas Nordborg
fixed: In 6256: […]
9:26 AM Changeset [6256] by Nicklas Nordborg
Fixes #1308: Add time intervals to the SCAN-B report
9:25 AM Changeset [6255] by Nicklas Nordborg
Reggie 4.31-dev
8:06 AM Changeset [6254] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.31
8:03 AM Ticket #1308 (Add time intervals to the SCAN-B report) created by Nicklas Nordborg
It would be nice with some information about how long time some things …

May 25, 2021:

4:11 PM Changeset [6253] by Nicklas Nordborg
References #1290: Implement a variant search extension Display an …
1:23 PM Changeset [6252] by Nicklas Nordborg
References #1290: Implement a variant search extension Minor changes …
1:23 PM Changeset [6251] by Nicklas Nordborg
References #1290: Implement a variant search extension Remove …
11:37 AM net.sf.basedb.varsearch/using edited by Nicklas Nordborg
Added information about setting a timeout for a query (diff)
9:44 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
Variant Search 1.0-beta-5 released (diff)
9:43 AM varsearch-1.0-beta-5.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.0-beta-5
9:42 AM Changeset [6250] by Nicklas Nordborg
Tagging Variant Search 1.0-beta-5
9:42 AM Changeset [6249] by Nicklas Nordborg
Preparing to release Variant Search 1.0-beta-5
8:56 AM Changeset [6248] by Nicklas Nordborg
References #1290: Implement a variant search extension Index the raw …

May 24, 2021:

1:21 PM Ticket #1307 (Printing tables with columns relying on extra style sheets) closed by Nicklas Nordborg
fixed: In 6247: […]
1:21 PM Changeset [6247] by Nicklas Nordborg
Fixes #1307: Printing tables with columns relying on extra style sheets
1:20 PM Changeset [6246] by Nicklas Nordborg
References #1290: Implement a variant search extension Use …
10:26 AM Changeset [6245] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …
8:51 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
(diff)

May 21, 2021:

2:50 PM net.sf.basedb.varsearch edited by Nicklas Nordborg
Variant Search 1.0-beta-4 released (diff)
2:50 PM varsearch-1.0-beta-4.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.0-beta-4
2:47 PM Changeset [6244] by Nicklas Nordborg
Tagging Variant Search 1.0-beta-4
2:47 PM Changeset [6243] by Nicklas Nordborg
Preparing to release Variant Search 1.0-beta-4
2:46 PM Changeset [6242] by Nicklas Nordborg
References #1290: Implement a variant search extension Several …
2:46 PM Changeset [6241] by Nicklas Nordborg
References #1290: Implement a variant search extension Several …

May 19, 2021:

8:34 AM Changeset [6240] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …
8:31 AM Changeset [6239] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …

May 18, 2021:

1:35 PM Ticket #1307 (Printing tables with columns relying on extra style sheets) created by Nicklas Nordborg
List pages can have extra columns that are created by extensions. It …
1:24 PM net.sf.basedb.varsearch edited by Nicklas Nordborg
Variant Search 1.0-beta-3 released (diff)
1:23 PM varsearch-1.0-beta-3.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.0-beta-3
1:21 PM Changeset [6238] by Nicklas Nordborg
Tagging Variant search 1.0-beta-3
1:20 PM Changeset [6237] by Nicklas Nordborg
Preparing to release Variant search 1.0-beta-3
1:12 PM Changeset [6236] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …

May 17, 2021:

2:56 PM Changeset [6235] by Nicklas Nordborg
References #1290: Implement a variant search extension Searching on …
2:54 PM Changeset [6234] by Nicklas Nordborg
References #1290: Implement a variant search extension Added code to …
2:53 PM Changeset [6233] by Nicklas Nordborg
References #1290: Implement a variant search extension Actually …
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