Timeline



Mar 4, 2021:

3:49 PM Changeset [6162] by Nicklas Nordborg
References #1298: Admin functions for the variant index Added missing …
1:04 PM Changeset [6161] by Nicklas Nordborg
References #1298: Admin functions for the variant index Added …
8:47 AM Changeset [6160] by Nicklas Nordborg
References #1298: Admin functions for the variant index Added an …

Mar 3, 2021:

9:06 AM Changeset [6159] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …
8:03 AM Ticket #1298 (Admin functions for the variant index) created by Nicklas Nordborg
To begin it we need a single page that display some information about …

Mar 2, 2021:

2:37 PM Changeset [6158] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …
1:06 PM Changeset [6157] by Nicklas Nordborg
References #1296: Configure which columns to display This function …
1:06 PM Changeset [6156] by Nicklas Nordborg
References #1296: Configure which columns to display This function …
8:34 AM Ticket #1297 (Implement a popup that display more information about a variant) created by Nicklas Nordborg
It would be nice to have a clickable link that opens a popup for each …
8:32 AM Ticket #1296 (Configure which columns to display) created by Nicklas Nordborg
It would be nice if it was possible to configure which columns to …

Mar 1, 2021:

8:48 AM Changeset [6155] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …

Feb 26, 2021:

3:25 PM Changeset [6154] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …
2:40 PM Changeset [6153] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …
1:11 PM Changeset [6152] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …
1:09 PM Changeset [6151] by Nicklas Nordborg
References #1295: Registration of specimen handled by external lab …

Feb 25, 2021:

11:21 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
(diff)
11:20 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
(diff)
11:19 AM varsearch-1.0-beta-1.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.0-beta-1
11:19 AM net.sf.basedb.varsearch edited by Nicklas Nordborg
Variant Search 1.0-beta-1 released (diff)
11:12 AM Ticket #1295 (Registration of specimen handled by external lab) created by Nicklas Nordborg
Note** This has only been fixed for importing from RNA. Further …
8:39 AM Changeset [6150] by Nicklas Nordborg
Tagging Variant search 1.0-beta-1
8:38 AM Changeset [6149] by Nicklas Nordborg
Preparing to release Variant search 1.0-beta-1

Feb 23, 2021:

1:54 PM net.sf.basedb.varsearch/using created by Nicklas Nordborg
Started to write documentation about searching for variants
1:10 PM net.sf.basedb.varsearch edited by Nicklas Nordborg
(diff)
1:02 PM Changeset [6148] by Nicklas Nordborg
References #1290: Implement a variant search extension Added a "Help" …
11:24 AM Changeset [6147] by Nicklas Nordborg
References #1290: Implement a variant search extension Improving some …
8:32 AM Changeset [6146] by Nicklas Nordborg
References #1290: Implement a variant search extension It is now …
8:32 AM Changeset [6145] by Nicklas Nordborg
8:30 AM Changeset [6144] by Nicklas Nordborg
References #1290: Implement a variant search extension The Lucene …

Feb 22, 2021:

1:09 PM Changeset [6143] by Nicklas Nordborg
References #1290: Implement a variant search extension Added 'TYPE' …
9:21 AM Changeset [6142] by Nicklas Nordborg
References #1290: Implement a variant search extension Check length …

Feb 19, 2021:

2:26 PM Changeset [6141] by Nicklas Nordborg
References #1290: Implement a variant search extension Added a …
11:27 AM Changeset [6140] by Nicklas Nordborg
References #1290: Implement a variant search extension Use separate …

Feb 18, 2021:

3:47 PM Changeset [6139] by Nicklas Nordborg
References #1290: Implement a variant search extension Add link to …
2:29 PM Changeset [6138] by Nicklas Nordborg
References #1290: Implement a variant search extension Add some more …
10:53 AM Changeset [6137] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented a …
8:55 AM Changeset [6136] by Nicklas Nordborg
References #1290: Implement a variant search extension Added support …

Feb 17, 2021:

11:00 AM Changeset [6135] by Nicklas Nordborg
References #1290: Implement a variant search extension Minor …

Feb 16, 2021:

4:10 PM Ticket #1294 (Report more information about unmatched INCA data) closed by Nicklas Nordborg
fixed: In 6134: […]
4:10 PM Changeset [6134] by Nicklas Nordborg
Fixes #1294: Report more information about unmatched INCA data
8:37 AM Ticket #1294 (Report more information about unmatched INCA data) created by Nicklas Nordborg
If the INCA importer can't match an entry from the INCA file to a case …
8:10 AM Changeset [6133] by Nicklas Nordborg
References #1290: Implement a variant search extension Re-factoring …
8:10 AM Changeset [6132] by Nicklas Nordborg
References #1290: Implement a variant search extension Re-factoring …

Feb 15, 2021:

1:27 PM Changeset [6131] by Nicklas Nordborg
References #1290: Implement a variant search extension Automatically …
9:20 AM Changeset [6130] by Nicklas Nordborg
References #1290: Implement a variant search extension Exporting …

Feb 12, 2021:

2:19 PM Changeset [6129] by Nicklas Nordborg
References #1290: Implement a variant search extension Improvements …
1:13 PM Changeset [6128] by Nicklas Nordborg
References #1290: Implement a variant search extension Some changes …
7:42 AM Changeset [6127] by Nicklas Nordborg
Changes for future release Reggie 4.32
7:40 AM Milestone Reggie v4.31 completed
See Reggie extension page for more information.
7:39 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.31 (diff)
7:38 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.31 (diff)
7:37 AM reggie-4.31.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.31
7:35 AM Changeset [6126] by Nicklas Nordborg
Tagging Reggie 4.31
7:35 AM Changeset [6125] by Nicklas Nordborg
Preparing to release Reggie 4.31

Feb 10, 2021:

2:28 PM Ticket #1293 (INCA import is importing to incorrect cases in some situations) closed by Nicklas Nordborg
fixed: In 6124: […]
2:28 PM Changeset [6124] by Nicklas Nordborg
Fixes #1293: INCA import is importing to incorrect cases in some situations
11:47 AM Ticket #1293 (INCA import is importing to incorrect cases in some situations) created by Nicklas Nordborg
A case in our database typically have LEFT or RIGHT laterality but it …

Feb 9, 2021:

11:11 AM Changeset [6123] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …

Feb 8, 2021:

2:11 PM Changeset [6122] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …
2:11 PM Changeset [6121] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …

Feb 5, 2021:

3:52 PM Changeset [6120] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …
3:51 PM Changeset [6119] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …
1:46 PM Changeset [6118] by Nicklas Nordborg
References #1290: Implement a variant search extension Improved …
12:52 PM Ticket #1291 (The Flagged RNA wizard has incorrect count for Libraries) closed by Nicklas Nordborg
fixed: In 6117: […]
12:52 PM Changeset [6117] by Nicklas Nordborg
Fixes #1291: The Flagged RNA wizard has incorrect count for Libraries
12:43 PM Ticket #1292 (Improve counting of raw bioassays in the Flagged RNA wizard) closed by Nicklas Nordborg
fixed: In 6116: […]
12:43 PM Changeset [6116] by Nicklas Nordborg
Fixes #1292: Improve counting of raw bioassays in the Flagged RNA wizard
11:24 AM Ticket #1292 (Improve counting of raw bioassays in the Flagged RNA wizard) created by Nicklas Nordborg
The current implementation simply count all raw bioassays. It would be …
11:22 AM Ticket #1291 (The Flagged RNA wizard has incorrect count for Libraries) created by Nicklas Nordborg
The count seems to include the temporary *.dil items.

Feb 4, 2021:

11:52 AM Changeset [6115] by Nicklas Nordborg
References #1290: Implement a variant search extension Started to …
11:51 AM Changeset [6114] by Nicklas Nordborg
References #1290: Implement a variant search extension Started to …

Feb 2, 2021:

11:44 AM Changeset [6113] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …
11:43 AM Changeset [6112] by Nicklas Nordborg
References #1290: Implement a variant search extension Implemented …
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