Timeline
Dec 19, 2019:
- 2:16 PM Changeset [5802] by
- References #1216: Finalize the "Confirm MIPs demux" wizard Number of …
- 2:03 PM Ticket #1219 (Start demux wizard for MIPs should be a separate wizard) closed by
- fixed: In 5801: […]
- 2:03 PM Changeset [5801] by
- Fixes #1219: Start demux wizard for MIPs should be a separate wizard
- 10:56 AM Ticket #1219 (Start demux wizard for MIPs should be a separate wizard) created by
- The "Start demux" wizard is currently shared between the RNAseq and …
- 10:51 AM Changeset [5800] by
- References #1216: Finalize the "Confirm MIPs demux" wizard Metrics …
Dec 18, 2019:
- 1:12 PM Changeset [5799] by
- References #1209: Add support for storing TMA specimen Added …
- 11:34 AM Changeset [5798] by
- References #1209: Add support for storing TMA specimen Added …
- 8:33 AM Changeset [5797] by
- References #1216: Finalize the "Confirm MIPs demux" wizard Added some …
- 7:32 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) reopened by
- I think we should add columns with Libplate+location and Barcode …
Dec 16, 2019:
- 2:35 PM Changeset [5796] by
- References #1215: Include mutation signature analysis in the variant …
- 2:33 PM Changeset [5795] by
- References #1215: Include mutation signature analysis in the variant …
- 12:44 PM Changeset [5794] by
- References #1215: Include mutation signature analysis in the variant …
- 11:30 AM Changeset [5793] by
- References #1215: Include mutation signature analysis in the variant …
- 9:03 AM Changeset [5792] by
- References #1215: Include mutation signature analysis in the variant …
- 8:32 AM Ticket #1217 (DoNotUse flags and comments should be copied to new child items) closed by
- fixed: In 5791: […]
- 8:32 AM Changeset [5791] by
- Fixes #1217: DoNotUse? flags and comments should be copied to new child …
Dec 13, 2019:
- 2:26 PM Changeset [5790] by
- References #1217: DoNotUse? flags and comments should be copied to new …
- 1:58 PM Changeset [5789] by
- References #1217: DoNotUse? flags and comments should be copied to new …
- 11:49 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) closed by
- fixed: In 5788: […]
- 11:49 AM Changeset [5788] by
- Fixes #1216: Finalize the "Confirm MIPs demux" wizard The wizard now …
- 11:02 AM Changeset [5787] by
- References #1216: Finalize the "Confirm MIPs demux" wizard Added the …
- 9:36 AM Ticket #1218 (Implement MIPs alignment) created by
- The next step after demux in the MIPs pipeline is an alignment step. A …
- 9:33 AM Ticket #1217 (DoNotUse flags and comments should be copied to new child items) created by
- In wizards with manual selection it is possible to select items with a …
- 9:26 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) created by
- This wizard is full with TODO that are mostly related to not knowing …
- 9:23 AM Ticket #1214 (Add support for external specimen) closed by
- fixed
- 9:22 AM Changeset [5786] by
- References #1214: Add support for external specimen Fixes an issue …
Dec 12, 2019:
- 2:26 PM Changeset [5785] by
- References #1214: Add support for external specimen When an external …
- 8:30 AM Changeset [5784] by
- References #1214: Add support for external specimen Histology images …
- 8:08 AM Changeset [5783] by
- References #1214: Add support for external specimen Display "External …
Dec 11, 2019:
- 4:00 PM Changeset [5782] by
- References #1214: Add support for external specimen Changes to …
- 1:08 PM Ticket #1215 (Include mutation signature analysis in the variant calling pipeline) created by
- A mutation signature can be calculated from the filtered variants VCF. …
- 12:53 PM Ticket #1214 (Add support for external specimen) created by
- This would be similar to the current support for external RNA items …
- 12:34 PM Changeset [5781] by
- References #1209: Add support for storing TMA specimen Added support …
Dec 10, 2019:
- 2:29 PM Ticket #1213 (Firefox fails to open some Print dialogs) closed by
- fixed: In 5780: […]
- 2:29 PM Changeset [5780] by
- Fixes #1213: Firefox fails to open some Print dialogs The dialogs are …
- 2:10 PM Ticket #1213 (Firefox fails to open some Print dialogs) created by
- There are several places in Reggie were a "Print" button should open a …
- 9:03 AM Changeset [5779] by
- References #1209: Add support for storing TMA specimen Added a …
Dec 9, 2019:
- 9:53 AM Ticket #1212 (Enable filtering step for variant calling in auto-confirm mode) created by
- Auto-confirmation will currently start variant calling in raw-only …
- 9:40 AM Ticket #1211 (Release exporter changes due to TMA specimen importer) created by
- When the TMA importer (#1209) is implemented we should also consider …
- 9:37 AM Changeset [5778] by
- References #1209: Add support for storing TMA specimen Implemented …
Dec 6, 2019:
- 9:50 AM Changeset [5777] by
- References #1209: Add support for storing TMA specimen First version …
- 8:08 AM Ticket #1210 (Variant calling fails if no variants are found) closed by
- fixed
- 8:07 AM Changeset [5776] by
- References #1210: Variant calling fails if no variants are found …
- 7:56 AM Changeset [5775] by
- References #1210: Variant calling fails if no variants are found …
Dec 5, 2019:
- 2:15 PM Ticket #1210 (Variant calling fails if no variants are found) created by
- The first vcfanno step fails with an error message: […] If there …
Dec 4, 2019:
- 12:59 PM Changeset [5774] by
- References #1209: Add support for storing TMA specimen Added new …
Dec 3, 2019:
- 1:40 PM Changeset [5773] by
- References #1208: Implement wizard for building database of variant …
- 11:56 AM Changeset [5772] by
- References #1208: Implement wizard for building database of variant …
- 11:54 AM Changeset [5771] by
- References #1208: Implement wizard for building database of variant …
- 9:40 AM Changeset [5770] by
- References #1208: Implement wizard for building database of variant …
- 9:38 AM Changeset [5769] by
- References #1208: Implement wizard for building database of variant …
Dec 2, 2019:
- 2:22 PM Changeset [5768] by
- References #1208: Implement wizard for building database of variant …
- 2:20 PM Changeset [5767] by
- References #1208: Implement wizard for building database of variant …
- 10:52 AM Changeset [5766] by
- References #1208: Implement wizard for building database of variant …
Nov 29, 2019:
- 2:30 PM Changeset [5765] by
- References #1208: Implement wizard for building database of variant …
- 1:49 PM Changeset [5764] by
- References #1208: Implement wizard for building database of variant …
- 1:11 PM Changeset [5763] by
- References #1208: Implement wizard for building database of variant …
- 8:33 AM Ticket #1209 (Add support for storing TMA specimen) created by
- TMA are sometimes created by external projects. We want to track some …
- 7:40 AM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) created by
- The annotation/filtering step in the variant calling pipeline is using …
Nov 28, 2019:
- 1:52 PM Ticket #1207 (Replace the "Nothing yet" in the activity log with a quote-of-the-day) closed by
- fixed: In 5762: […]
- 1:52 PM Changeset [5762] by
- Fixes #1207: Replace the "Nothing yet" in the activity log with a …
- 9:06 AM Changeset [5761] by
- References #1207: Replace the "Nothing yet" in the activity log with a …
- 8:53 AM Ticket #1207 (Replace the "Nothing yet" in the activity log with a quote-of-the-day) created by
- The "Nothing yet" message in the activity log is a bit boring. We can …
Nov 26, 2019:
- 1:10 PM Changeset [5760] by
- Merged Reggie 4.24.1 to the trunk.
- 1:06 PM Milestone Reggie v4.24.1 completed
- Bug fixes and enhancements for Reggie 4.24. Revision Log: …
- 1:05 PM PluginDownload edited by
- Released Reggie 4.24.1 (diff)
- 1:05 PM net.sf.basedb.reggie edited by
- Released Reggie 4.24.1 (diff)
- 1:03 PM Ticket #1206 (The MIPs aliquot importer should handle some values as special cases) closed by
- fixed: Closing this for now since we need to release the other bugfixes. If …
- 12:59 PM Changeset [5759] by
- Tagging Reggie 4.24.1
- 12:57 PM Changeset [5758] by
- Preparing to release Reggie 4.24.1
- 9:25 AM Changeset [5757] by
- References #1206: The MIPs aliquot importer should handle some values …
- 9:02 AM Ticket #1206 (The MIPs aliquot importer should handle some values as special cases) created by
- Some of the columns in the file used for importing MIPs aliquots …
- 8:53 AM Ticket #1202 (Add check for duplicate barcode template in the MIPs library registration) closed by
- fixed
- 7:56 AM Changeset [5756] by
- Refs #1029. Registration of blood and FFPE blocks updated to set …
Nov 25, 2019:
- 9:40 AM Changeset [5755] by
- References #1202: Add check for duplicate barcode template in the MIPs …
Nov 22, 2019:
- 2:04 PM Changeset [5754] by
- References #1202: Add check for duplicate barcode template in the MIPs …
- 1:46 PM Ticket #1205 (Variant calling fails with "malformed BED entry") closed by
- fixed
- 1:10 PM Changeset [5753] by
- References #1205: Variant calling fails with "malformed BED entry" …
- 1:02 PM Changeset [5752] by
- References #1205: Variant calling fails with "malformed BED entry" …
- 12:52 PM Ticket #1205 (Variant calling fails with "malformed BED entry") created by
- The full error message: […] This seems to happen when a variant is …
- 11:09 AM Ticket #1204 (Change default flow cell type in MIPs create flow cells wizard) closed by
- fixed: In 5751: […]
- 11:09 AM Changeset [5751] by
- Fixes #1204: Change default flow cell type in MIPs create flow cells wizard
- 11:07 AM Ticket #1201 (Incorrect date is displayed for variant calling in the case summary) closed by
- fixed: In 5750: […]
- 11:07 AM Changeset [5750] by
- Fixes #1201: Incorrect date is displayed for variant calling in the …
- 11:02 AM Ticket #1203 (Resolve thread deadlocks) closed by
- fixed: In 5749: […]
- 11:02 AM Changeset [5749] by
- Fixes #1203: Resolve thread deadlocks This should hopefully fix the …
- 9:56 AM Ticket #1204 (Change default flow cell type in MIPs create flow cells wizard) created by
- The NextSeq is the only sequencer that is used.
- 9:44 AM Ticket #1203 (Resolve thread deadlocks) created by
- I have had some issues with thread deadlocks during re-installation of …
Nov 21, 2019:
- 1:19 PM Ticket #1202 (Add check for duplicate barcode template in the MIPs library registration) created by
- In the MIPs library registration wizard it is important that the …
- 1:13 PM Ticket #1201 (Incorrect date is displayed for variant calling in the case summary) created by
- It seems like the date that is displayed is the same as the date for …
- 1:09 PM Changeset [5748] by
- Creating bugfix branch for Reggie 4.24
- 8:40 AM Changeset [5747] by
- Fixes an issue with missing "N" values in the lookup tables for GC …
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